Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26075

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26070 and AO353_26075 are separated by 834 nucleotidesAO353_26075 and AO353_26080 are separated by 138 nucleotidesAO353_26080 and AO353_26085 are separated by 120 nucleotides AO353_26070: AO353_26070 - hypothetical protein, at 5,739,788 to 5,740,189 _26070 AO353_26075: AO353_26075 - FAD-binding protein, at 5,741,024 to 5,742,712 _26075 AO353_26080: AO353_26080 - hypothetical protein, at 5,742,851 to 5,743,060 _26080 AO353_26085: AO353_26085 - hypothetical protein, at 5,743,181 to 5,744,263 _26085 Position (kb) 5741 5742 5743Strain fitness (log2 ratio) -2 -1 0 1 2at 5740.048 kb on + strand, within AO353_26070at 5740.119 kb on + strand, within AO353_26070at 5740.119 kb on + strand, within AO353_26070at 5740.120 kb on - strand, within AO353_26070at 5740.120 kb on - strand, within AO353_26070at 5740.122 kb on - strand, within AO353_26070at 5740.188 kb on - strandat 5740.258 kb on + strandat 5740.259 kb on - strandat 5740.261 kb on - strandat 5740.491 kb on - strandat 5740.520 kb on - strandat 5740.591 kb on + strandat 5740.657 kb on + strandat 5740.657 kb on + strandat 5740.657 kb on + strandat 5740.657 kb on + strandat 5740.657 kb on + strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.693 kb on - strandat 5740.696 kb on - strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.782 kb on - strandat 5740.782 kb on - strandat 5740.782 kb on - strandat 5740.782 kb on - strandat 5740.782 kb on - strandat 5740.784 kb on + strandat 5740.784 kb on + strandat 5740.827 kb on + strandat 5740.844 kb on + strandat 5740.868 kb on - strandat 5740.919 kb on + strandat 5740.920 kb on - strandat 5740.920 kb on - strandat 5741.072 kb on - strandat 5741.150 kb on + strandat 5741.150 kb on + strandat 5741.151 kb on - strandat 5741.155 kb on - strandat 5741.155 kb on - strandat 5741.155 kb on - strandat 5741.375 kb on - strand, within AO353_26075at 5741.571 kb on + strand, within AO353_26075at 5741.572 kb on - strand, within AO353_26075at 5741.572 kb on - strand, within AO353_26075at 5741.714 kb on + strand, within AO353_26075at 5741.951 kb on + strand, within AO353_26075at 5741.951 kb on + strand, within AO353_26075at 5741.952 kb on - strand, within AO353_26075at 5742.021 kb on + strand, within AO353_26075at 5742.022 kb on - strand, within AO353_26075at 5742.054 kb on - strand, within AO353_26075at 5742.054 kb on - strand, within AO353_26075at 5742.067 kb on - strand, within AO353_26075at 5742.070 kb on - strand, within AO353_26075at 5742.152 kb on + strand, within AO353_26075at 5742.169 kb on + strand, within AO353_26075at 5742.169 kb on + strand, within AO353_26075at 5742.172 kb on + strand, within AO353_26075at 5742.173 kb on - strand, within AO353_26075at 5742.173 kb on - strand, within AO353_26075at 5742.320 kb on + strand, within AO353_26075at 5742.321 kb on - strand, within AO353_26075at 5742.355 kb on + strand, within AO353_26075at 5742.508 kb on + strand, within AO353_26075at 5742.508 kb on + strand, within AO353_26075at 5742.509 kb on - strand, within AO353_26075at 5742.512 kb on + strand, within AO353_26075at 5742.513 kb on - strand, within AO353_26075at 5742.524 kb on + strand, within AO353_26075at 5742.525 kb on - strand, within AO353_26075at 5742.543 kb on + strand, within AO353_26075at 5742.543 kb on + strand, within AO353_26075at 5742.543 kb on + strand, within AO353_26075at 5742.552 kb on + strandat 5742.552 kb on + strandat 5742.553 kb on - strandat 5742.555 kb on + strandat 5742.556 kb on - strandat 5742.593 kb on + strandat 5742.605 kb on - strandat 5742.616 kb on - strandat 5742.688 kb on - strandat 5742.691 kb on - strandat 5742.830 kb on - strandat 5742.994 kb on - strand, within AO353_26080at 5742.994 kb on - strand, within AO353_26080at 5742.994 kb on - strand, within AO353_26080at 5743.080 kb on - strandat 5743.187 kb on - strandat 5743.191 kb on + strandat 5743.277 kb on - strandat 5743.300 kb on + strand, within AO353_26085at 5743.398 kb on + strand, within AO353_26085at 5743.472 kb on + strand, within AO353_26085at 5743.594 kb on - strand, within AO353_26085at 5743.640 kb on + strand, within AO353_26085at 5743.641 kb on - strand, within AO353_26085at 5743.641 kb on - strand, within AO353_26085at 5743.645 kb on - strand, within AO353_26085at 5743.654 kb on - strand, within AO353_26085

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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5,740,048 + AO353_26070 0.65 -0.0
5,740,119 + AO353_26070 0.82 +0.3
5,740,119 + AO353_26070 0.82 -0.7
5,740,120 - AO353_26070 0.83 +1.3
5,740,120 - AO353_26070 0.83 -1.1
5,740,122 - AO353_26070 0.83 +0.3
5,740,188 - -0.1
5,740,258 + +0.1
5,740,259 - +1.3
5,740,261 - -0.3
5,740,491 - -1.5
5,740,520 - -1.3
5,740,591 + +0.3
5,740,657 + -1.3
5,740,657 + +0.7
5,740,657 + -1.5
5,740,657 + +0.7
5,740,657 + +0.3
5,740,658 - +0.9
5,740,658 - -0.9
5,740,658 - +1.3
5,740,658 - +1.3
5,740,658 - +0.1
5,740,658 - -0.3
5,740,658 - +0.7
5,740,693 - +1.0
5,740,696 - -0.9
5,740,781 + +1.7
5,740,781 + +1.3
5,740,781 + -0.3
5,740,781 + -1.3
5,740,781 + -0.7
5,740,781 + +0.3
5,740,781 + -0.3
5,740,781 + -1.3
5,740,781 + +0.1
5,740,782 - +1.8
5,740,782 - +0.9
5,740,782 - +0.2
5,740,782 - +1.3
5,740,782 - +0.3
5,740,784 + +0.1
5,740,784 + -0.1
5,740,827 + +0.4
5,740,844 + +0.4
5,740,868 - -0.7
5,740,919 + -0.3
5,740,920 - -0.3
5,740,920 - +1.7
5,741,072 - +0.7
5,741,150 + -1.3
5,741,150 + +1.1
5,741,151 - +1.3
5,741,155 - -1.0
5,741,155 - +0.1
5,741,155 - +0.3
5,741,375 - AO353_26075 0.21 -2.3
5,741,571 + AO353_26075 0.32 -0.7
5,741,572 - AO353_26075 0.32 -0.9
5,741,572 - AO353_26075 0.32 +0.7
5,741,714 + AO353_26075 0.41 +2.3
5,741,951 + AO353_26075 0.55 +0.9
5,741,951 + AO353_26075 0.55 +0.7
5,741,952 - AO353_26075 0.55 +0.7
5,742,021 + AO353_26075 0.59 +0.7
5,742,022 - AO353_26075 0.59 +2.5
5,742,054 - AO353_26075 0.61 +0.7
5,742,054 - AO353_26075 0.61 +1.3
5,742,067 - AO353_26075 0.62 +0.3
5,742,070 - AO353_26075 0.62 +0.7
5,742,152 + AO353_26075 0.67 +1.0
5,742,169 + AO353_26075 0.68 -1.3
5,742,169 + AO353_26075 0.68 +0.4
5,742,172 + AO353_26075 0.68 +0.2
5,742,173 - AO353_26075 0.68 +1.7
5,742,173 - AO353_26075 0.68 +1.3
5,742,320 + AO353_26075 0.77 -0.0
5,742,321 - AO353_26075 0.77 +0.9
5,742,355 + AO353_26075 0.79 +1.7
5,742,508 + AO353_26075 0.88 +0.1
5,742,508 + AO353_26075 0.88 +1.9
5,742,509 - AO353_26075 0.88 -1.3
5,742,512 + AO353_26075 0.88 +0.3
5,742,513 - AO353_26075 0.88 -0.3
5,742,524 + AO353_26075 0.89 +0.7
5,742,525 - AO353_26075 0.89 +2.2
5,742,543 + AO353_26075 0.90 +0.6
5,742,543 + AO353_26075 0.90 -0.3
5,742,543 + AO353_26075 0.90 +1.7
5,742,552 + +0.7
5,742,552 + -0.3
5,742,553 - -1.3
5,742,555 + -0.3
5,742,556 - -0.3
5,742,593 + +0.1
5,742,605 - -0.3
5,742,616 - -0.7
5,742,688 - +1.4
5,742,691 - +0.1
5,742,830 - -0.3
5,742,994 - AO353_26080 0.68 +0.4
5,742,994 - AO353_26080 0.68 +1.4
5,742,994 - AO353_26080 0.68 -0.4
5,743,080 - +0.2
5,743,187 - +1.0
5,743,191 + +0.7
5,743,277 - +0.7
5,743,300 + AO353_26085 0.11 +0.5
5,743,398 + AO353_26085 0.20 -0.1
5,743,472 + AO353_26085 0.27 -1.9
5,743,594 - AO353_26085 0.38 -0.6
5,743,640 + AO353_26085 0.42 -1.3
5,743,641 - AO353_26085 0.42 -0.3
5,743,641 - AO353_26085 0.42 +2.2
5,743,645 - AO353_26085 0.43 +2.3
5,743,654 - AO353_26085 0.44 +0.2

Or see this region's nucleotide sequence