Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25745

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25740 and AO353_25745 are separated by 128 nucleotidesAO353_25745 and AO353_25750 are separated by 11 nucleotidesAO353_25750 and AO353_25755 overlap by 4 nucleotidesAO353_25755 and AO353_25760 overlap by 4 nucleotides AO353_25740: AO353_25740 - FMN-dependent NADH-azoreductase, at 5,676,327 to 5,676,938 _25740 AO353_25745: AO353_25745 - LysR family transcriptional regulator, at 5,677,067 to 5,677,975 _25745 AO353_25750: AO353_25750 - hypothetical protein, at 5,677,987 to 5,678,331 _25750 AO353_25755: AO353_25755 - hypothetical protein, at 5,678,328 to 5,678,732 _25755 AO353_25760: AO353_25760 - UDP pyrophosphate phosphatase, at 5,678,729 to 5,679,559 _25760 Position (kb) 5677 5678Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5676.095 kb on + strandat 5676.123 kb on - strandat 5676.158 kb on + strandat 5676.158 kb on + strandat 5676.159 kb on - strandat 5676.159 kb on - strandat 5676.159 kb on - strandat 5676.208 kb on + strandat 5676.208 kb on + strandat 5676.209 kb on - strandat 5676.209 kb on - strandat 5676.209 kb on - strandat 5676.209 kb on - strandat 5676.229 kb on - strandat 5676.234 kb on + strandat 5676.234 kb on + strandat 5676.234 kb on + strandat 5676.235 kb on - strandat 5676.235 kb on - strandat 5676.235 kb on - strandat 5676.263 kb on + strandat 5676.277 kb on + strandat 5676.278 kb on - strandat 5676.286 kb on + strandat 5676.286 kb on + strandat 5676.287 kb on - strandat 5676.293 kb on + strandat 5676.309 kb on + strandat 5676.309 kb on + strandat 5676.310 kb on - strandat 5676.318 kb on - strandat 5676.318 kb on - strandat 5676.456 kb on + strand, within AO353_25740at 5676.456 kb on + strand, within AO353_25740at 5676.456 kb on + strand, within AO353_25740at 5676.457 kb on - strand, within AO353_25740at 5676.472 kb on + strand, within AO353_25740at 5676.472 kb on + strand, within AO353_25740at 5676.472 kb on + strand, within AO353_25740at 5676.473 kb on - strand, within AO353_25740at 5676.486 kb on + strand, within AO353_25740at 5676.487 kb on - strand, within AO353_25740at 5676.581 kb on - strand, within AO353_25740at 5676.581 kb on - strand, within AO353_25740at 5676.652 kb on + strand, within AO353_25740at 5676.653 kb on - strand, within AO353_25740at 5676.653 kb on - strand, within AO353_25740at 5676.653 kb on - strand, within AO353_25740at 5677.088 kb on + strandat 5677.088 kb on + strandat 5677.088 kb on + strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.089 kb on - strandat 5677.091 kb on + strandat 5677.585 kb on + strand, within AO353_25745at 5677.586 kb on - strand, within AO353_25745at 5677.587 kb on + strand, within AO353_25745at 5677.588 kb on - strand, within AO353_25745at 5677.799 kb on + strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strandat 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.800 kb on - strand, within AO353_25745at 5677.972 kb on - strandat 5677.972 kb on - strandat 5678.044 kb on + strand, within AO353_25750at 5678.045 kb on - strand, within AO353_25750at 5678.045 kb on - strand, within AO353_25750at 5678.060 kb on + strand, within AO353_25750at 5678.060 kb on + strand, within AO353_25750at 5678.061 kb on - strand, within AO353_25750at 5678.102 kb on + strand, within AO353_25750at 5678.103 kb on - strand, within AO353_25750at 5678.191 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.252 kb on + strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.253 kb on - strand, within AO353_25750at 5678.321 kb on + strandat 5678.321 kb on + strandat 5678.321 kb on + strandat 5678.321 kb on + strandat 5678.321 kb on + strandat 5678.329 kb on + strandat 5678.330 kb on - strandat 5678.330 kb on - strandat 5678.419 kb on + strand, within AO353_25755at 5678.420 kb on - strand, within AO353_25755at 5678.420 kb on - strand, within AO353_25755at 5678.420 kb on - strand, within AO353_25755at 5678.420 kb on - strand, within AO353_25755at 5678.519 kb on + strand, within AO353_25755at 5678.519 kb on + strand, within AO353_25755at 5678.520 kb on - strand, within AO353_25755at 5678.560 kb on + strand, within AO353_25755at 5678.560 kb on + strand, within AO353_25755at 5678.560 kb on + strand, within AO353_25755at 5678.593 kb on + strand, within AO353_25755at 5678.593 kb on + strand, within AO353_25755at 5678.593 kb on + strand, within AO353_25755at 5678.594 kb on - strand, within AO353_25755at 5678.594 kb on - strand, within AO353_25755at 5678.737 kb on + strandat 5678.737 kb on + strandat 5678.738 kb on - strandat 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.823 kb on + strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.824 kb on - strand, within AO353_25760at 5678.877 kb on - strand, within AO353_25760at 5678.879 kb on - strand, within AO353_25760at 5678.947 kb on - strand, within AO353_25760at 5678.955 kb on + strand, within AO353_25760at 5678.956 kb on - strand, within AO353_25760at 5678.956 kb on - strand, within AO353_25760

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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5,676,095 + -1.0
5,676,123 - +1.3
5,676,158 + +2.5
5,676,158 + +1.3
5,676,159 - +2.1
5,676,159 - +0.7
5,676,159 - +1.7
5,676,208 + -1.0
5,676,208 + +2.1
5,676,209 - +0.7
5,676,209 - -0.9
5,676,209 - +0.3
5,676,209 - +0.3
5,676,229 - +2.0
5,676,234 + +0.2
5,676,234 + -0.0
5,676,234 + -0.3
5,676,235 - -0.3
5,676,235 - -0.6
5,676,235 - +1.2
5,676,263 + -0.9
5,676,277 + -0.4
5,676,278 - -0.5
5,676,286 + +0.7
5,676,286 + +1.0
5,676,287 - -1.3
5,676,293 + +2.1
5,676,309 + +2.5
5,676,309 + +1.1
5,676,310 - -0.9
5,676,318 - -0.3
5,676,318 - -0.3
5,676,456 + AO353_25740 0.21 +0.1
5,676,456 + AO353_25740 0.21 -0.7
5,676,456 + AO353_25740 0.21 +0.1
5,676,457 - AO353_25740 0.21 +3.3
5,676,472 + AO353_25740 0.24 +2.6
5,676,472 + AO353_25740 0.24 +0.2
5,676,472 + AO353_25740 0.24 +1.9
5,676,473 - AO353_25740 0.24 +1.1
5,676,486 + AO353_25740 0.26 -0.1
5,676,487 - AO353_25740 0.26 +0.7
5,676,581 - AO353_25740 0.42 +1.1
5,676,581 - AO353_25740 0.42 -1.3
5,676,652 + AO353_25740 0.53 -1.9
5,676,653 - AO353_25740 0.53 +0.4
5,676,653 - AO353_25740 0.53 -0.5
5,676,653 - AO353_25740 0.53 +1.3
5,677,088 + -0.5
5,677,088 + +0.0
5,677,088 + +0.0
5,677,089 - -1.3
5,677,089 - +0.5
5,677,089 - +0.7
5,677,089 - +0.5
5,677,089 - +1.3
5,677,089 - -1.3
5,677,089 - +0.5
5,677,091 + -0.3
5,677,585 + AO353_25745 0.57 -1.9
5,677,586 - AO353_25745 0.57 +0.7
5,677,587 + AO353_25745 0.57 -0.5
5,677,588 - AO353_25745 0.57 +2.9
5,677,799 + AO353_25745 0.81 -1.3
5,677,800 - AO353_25745 0.81 +2.4
5,677,800 - AO353_25745 0.81 +0.7
5,677,800 - AO353_25745 0.81 +0.7
5,677,800 - -1.3
5,677,800 - AO353_25745 0.81 -0.3
5,677,800 - AO353_25745 0.81 -0.3
5,677,800 - AO353_25745 0.81 +0.7
5,677,800 - AO353_25745 0.81 -0.6
5,677,800 - AO353_25745 0.81 +2.0
5,677,972 - +0.7
5,677,972 - -0.6
5,678,044 + AO353_25750 0.17 +1.9
5,678,045 - AO353_25750 0.17 +0.7
5,678,045 - AO353_25750 0.17 +1.0
5,678,060 + AO353_25750 0.21 -0.3
5,678,060 + AO353_25750 0.21 +2.1
5,678,061 - AO353_25750 0.21 -1.0
5,678,102 + AO353_25750 0.33 +0.1
5,678,103 - AO353_25750 0.34 +1.3
5,678,191 + AO353_25750 0.59 -2.3
5,678,252 + AO353_25750 0.77 +2.3
5,678,252 + AO353_25750 0.77 +0.1
5,678,252 + AO353_25750 0.77 +0.1
5,678,252 + AO353_25750 0.77 -0.3
5,678,252 + AO353_25750 0.77 +0.2
5,678,253 - AO353_25750 0.77 +0.7
5,678,253 - AO353_25750 0.77 -0.6
5,678,253 - AO353_25750 0.77 +0.7
5,678,253 - AO353_25750 0.77 +0.7
5,678,253 - AO353_25750 0.77 -0.3
5,678,321 + +1.7
5,678,321 + -0.5
5,678,321 + -1.3
5,678,321 + -0.9
5,678,321 + -0.3
5,678,329 + +1.3
5,678,330 - +2.5
5,678,330 - -0.9
5,678,419 + AO353_25755 0.22 -1.0
5,678,420 - AO353_25755 0.23 +0.3
5,678,420 - AO353_25755 0.23 +1.5
5,678,420 - AO353_25755 0.23 -0.9
5,678,420 - AO353_25755 0.23 +2.3
5,678,519 + AO353_25755 0.47 +0.1
5,678,519 + AO353_25755 0.47 +1.0
5,678,520 - AO353_25755 0.47 -0.3
5,678,560 + AO353_25755 0.57 +0.2
5,678,560 + AO353_25755 0.57 -0.1
5,678,560 + AO353_25755 0.57 +0.2
5,678,593 + AO353_25755 0.65 +1.2
5,678,593 + AO353_25755 0.65 +0.2
5,678,593 + AO353_25755 0.65 +1.0
5,678,594 - AO353_25755 0.66 -0.3
5,678,594 - AO353_25755 0.66 +1.3
5,678,737 + -0.9
5,678,737 + +1.3
5,678,738 - -0.9
5,678,823 + AO353_25760 0.11 +0.7
5,678,823 + AO353_25760 0.11 -0.3
5,678,823 + AO353_25760 0.11 +1.3
5,678,823 + AO353_25760 0.11 +1.3
5,678,823 + AO353_25760 0.11 -1.9
5,678,823 + AO353_25760 0.11 -0.9
5,678,824 - AO353_25760 0.11 -0.4
5,678,824 - AO353_25760 0.11 +0.8
5,678,824 - AO353_25760 0.11 -2.3
5,678,824 - AO353_25760 0.11 -0.3
5,678,824 - AO353_25760 0.11 +2.7
5,678,824 - AO353_25760 0.11 +1.0
5,678,824 - AO353_25760 0.11 +0.2
5,678,824 - AO353_25760 0.11 -0.4
5,678,824 - AO353_25760 0.11 +2.9
5,678,824 - AO353_25760 0.11 +0.2
5,678,824 - AO353_25760 0.11 +0.5
5,678,877 - AO353_25760 0.18 +2.3
5,678,879 - AO353_25760 0.18 +1.7
5,678,947 - AO353_25760 0.26 +3.3
5,678,955 + AO353_25760 0.27 +0.4
5,678,956 - AO353_25760 0.27 -0.9
5,678,956 - AO353_25760 0.27 +0.7

Or see this region's nucleotide sequence