Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24935

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24930 and AO353_24935 overlap by 4 nucleotidesAO353_24935 and AO353_24940 overlap by 4 nucleotidesAO353_24940 and AO353_24945 are separated by 303 nucleotides AO353_24930: AO353_24930 - Fe-S cluster assembly protein SufD, at 5,498,481 to 5,499,791 _24930 AO353_24935: AO353_24935 - cysteine sulfinate desulfinase, at 5,499,788 to 5,501,062 _24935 AO353_24940: AO353_24940 - nitrogen fixation protein NifU, at 5,501,059 to 5,501,517 _24940 AO353_24945: AO353_24945 - hypothetical protein, at 5,501,821 to 5,502,357 _24945 Position (kb) 5499 5500 5501 5502Strain fitness (log2 ratio) -2 -1 0 1 2at 5499.102 kb on + strand, within AO353_24930at 5499.103 kb on - strand, within AO353_24930at 5499.146 kb on + strand, within AO353_24930at 5499.160 kb on - strand, within AO353_24930at 5499.160 kb on - strand, within AO353_24930at 5499.160 kb on - strand, within AO353_24930at 5499.362 kb on + strand, within AO353_24930at 5499.414 kb on + strand, within AO353_24930at 5499.414 kb on + strand, within AO353_24930at 5499.416 kb on + strand, within AO353_24930at 5499.416 kb on + strand, within AO353_24930at 5499.417 kb on - strand, within AO353_24930at 5499.417 kb on - strand, within AO353_24930at 5499.566 kb on - strand, within AO353_24930at 5499.626 kb on + strand, within AO353_24930at 5499.626 kb on + strand, within AO353_24930at 5499.626 kb on + strand, within AO353_24930at 5499.634 kb on - strand, within AO353_24930at 5499.651 kb on - strand, within AO353_24930at 5499.838 kb on + strandat 5499.848 kb on + strandat 5499.849 kb on - strandat 5499.849 kb on - strandat 5499.899 kb on + strandat 5499.899 kb on + strandat 5499.917 kb on + strand, within AO353_24935at 5499.967 kb on + strand, within AO353_24935at 5499.967 kb on + strand, within AO353_24935at 5499.968 kb on - strand, within AO353_24935at 5500.019 kb on + strand, within AO353_24935at 5500.019 kb on + strand, within AO353_24935at 5500.020 kb on - strandat 5500.020 kb on - strand, within AO353_24935at 5500.046 kb on + strand, within AO353_24935at 5500.046 kb on + strand, within AO353_24935at 5500.046 kb on + strand, within AO353_24935at 5500.046 kb on + strand, within AO353_24935at 5500.046 kb on + strand, within AO353_24935at 5500.047 kb on - strand, within AO353_24935at 5500.047 kb on - strand, within AO353_24935at 5500.047 kb on - strand, within AO353_24935at 5500.154 kb on + strand, within AO353_24935at 5500.155 kb on - strand, within AO353_24935at 5500.155 kb on - strand, within AO353_24935at 5500.155 kb on - strand, within AO353_24935at 5500.426 kb on - strand, within AO353_24935at 5500.476 kb on + strand, within AO353_24935at 5500.477 kb on - strand, within AO353_24935at 5500.477 kb on - strand, within AO353_24935at 5500.477 kb on - strand, within AO353_24935at 5500.477 kb on - strand, within AO353_24935at 5500.477 kb on - strand, within AO353_24935at 5500.477 kb on - strand, within AO353_24935at 5500.477 kb on - strand, within AO353_24935at 5500.500 kb on - strand, within AO353_24935at 5500.517 kb on - strand, within AO353_24935at 5500.517 kb on - strand, within AO353_24935at 5500.550 kb on + strand, within AO353_24935at 5500.586 kb on + strand, within AO353_24935at 5500.638 kb on - strand, within AO353_24935at 5500.772 kb on + strand, within AO353_24935at 5500.772 kb on + strand, within AO353_24935at 5500.888 kb on + strand, within AO353_24935at 5500.995 kb on - strandat 5501.200 kb on + strand, within AO353_24940at 5501.201 kb on - strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.346 kb on + strand, within AO353_24940at 5501.347 kb on - strand, within AO353_24940at 5501.347 kb on - strand, within AO353_24940at 5501.347 kb on - strand, within AO353_24940at 5501.347 kb on - strandat 5501.347 kb on - strand, within AO353_24940at 5501.347 kb on - strand, within AO353_24940at 5501.347 kb on - strand, within AO353_24940at 5501.347 kb on - strand, within AO353_24940at 5501.515 kb on + strandat 5501.515 kb on + strandat 5501.515 kb on + strandat 5501.515 kb on + strandat 5501.516 kb on - strandat 5501.538 kb on - strandat 5501.550 kb on + strandat 5501.767 kb on + strandat 5501.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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5,499,102 + AO353_24930 0.47 +0.7
5,499,103 - AO353_24930 0.47 -0.3
5,499,146 + AO353_24930 0.51 -1.0
5,499,160 - AO353_24930 0.52 +0.7
5,499,160 - AO353_24930 0.52 +1.3
5,499,160 - AO353_24930 0.52 +2.7
5,499,362 + AO353_24930 0.67 +0.3
5,499,414 + AO353_24930 0.71 +0.7
5,499,414 + AO353_24930 0.71 +0.7
5,499,416 + AO353_24930 0.71 +1.6
5,499,416 + AO353_24930 0.71 +0.7
5,499,417 - AO353_24930 0.71 +1.4
5,499,417 - AO353_24930 0.71 +1.3
5,499,566 - AO353_24930 0.83 -1.3
5,499,626 + AO353_24930 0.87 +0.9
5,499,626 + AO353_24930 0.87 -2.1
5,499,626 + AO353_24930 0.87 -0.9
5,499,634 - AO353_24930 0.88 +0.4
5,499,651 - AO353_24930 0.89 +1.7
5,499,838 + -0.3
5,499,848 + -1.3
5,499,849 - +1.7
5,499,849 - +0.7
5,499,899 + +2.7
5,499,899 + +0.6
5,499,917 + AO353_24935 0.10 +0.7
5,499,967 + AO353_24935 0.14 -1.9
5,499,967 + AO353_24935 0.14 -0.3
5,499,968 - AO353_24935 0.14 +0.4
5,500,019 + AO353_24935 0.18 +0.1
5,500,019 + AO353_24935 0.18 +2.3
5,500,020 - +1.0
5,500,020 - AO353_24935 0.18 +1.3
5,500,046 + AO353_24935 0.20 -1.9
5,500,046 + AO353_24935 0.20 -0.1
5,500,046 + AO353_24935 0.20 +0.0
5,500,046 + AO353_24935 0.20 +1.0
5,500,046 + AO353_24935 0.20 -2.3
5,500,047 - AO353_24935 0.20 -1.0
5,500,047 - AO353_24935 0.20 +0.8
5,500,047 - AO353_24935 0.20 +0.4
5,500,154 + AO353_24935 0.29 +1.3
5,500,155 - AO353_24935 0.29 +2.5
5,500,155 - AO353_24935 0.29 -0.0
5,500,155 - AO353_24935 0.29 +0.3
5,500,426 - AO353_24935 0.50 +2.3
5,500,476 + AO353_24935 0.54 +2.0
5,500,477 - AO353_24935 0.54 +1.0
5,500,477 - AO353_24935 0.54 +1.1
5,500,477 - AO353_24935 0.54 +0.2
5,500,477 - AO353_24935 0.54 +0.7
5,500,477 - AO353_24935 0.54 -0.0
5,500,477 - AO353_24935 0.54 +0.4
5,500,477 - AO353_24935 0.54 +2.0
5,500,500 - AO353_24935 0.56 +1.7
5,500,517 - AO353_24935 0.57 -0.3
5,500,517 - AO353_24935 0.57 -1.3
5,500,550 + AO353_24935 0.60 +1.0
5,500,586 + AO353_24935 0.63 +0.6
5,500,638 - AO353_24935 0.67 +0.7
5,500,772 + AO353_24935 0.77 -0.3
5,500,772 + AO353_24935 0.77 +0.1
5,500,888 + AO353_24935 0.86 +0.3
5,500,995 - +0.3
5,501,200 + AO353_24940 0.31 -0.9
5,501,201 - AO353_24940 0.31 -0.7
5,501,346 + AO353_24940 0.63 +0.5
5,501,346 + AO353_24940 0.63 -0.7
5,501,346 + AO353_24940 0.63 +0.9
5,501,346 + AO353_24940 0.63 +0.7
5,501,346 + AO353_24940 0.63 -1.0
5,501,346 + AO353_24940 0.63 +0.0
5,501,346 + AO353_24940 0.63 -1.3
5,501,346 + AO353_24940 0.63 +1.2
5,501,346 + AO353_24940 0.63 +0.4
5,501,346 + AO353_24940 0.63 -1.3
5,501,347 - AO353_24940 0.63 -1.8
5,501,347 - AO353_24940 0.63 -1.9
5,501,347 - AO353_24940 0.63 +1.0
5,501,347 - +0.7
5,501,347 - AO353_24940 0.63 +0.1
5,501,347 - AO353_24940 0.63 +2.3
5,501,347 - AO353_24940 0.63 +0.1
5,501,347 - AO353_24940 0.63 -0.6
5,501,515 + +0.0
5,501,515 + -1.0
5,501,515 + +1.3
5,501,515 + -0.9
5,501,516 - +0.7
5,501,538 - +0.5
5,501,550 + +0.7
5,501,767 + -0.3
5,501,819 - +0.7

Or see this region's nucleotide sequence