Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24850

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24845 and AO353_24850 are separated by 60 nucleotidesAO353_24850 and AO353_24855 overlap by 8 nucleotides AO353_24845: AO353_24845 - decarboxylase, at 5,479,283 to 5,480,890 _24845 AO353_24850: AO353_24850 - aspartate aminotransferase, at 5,480,951 to 5,482,141 _24850 AO353_24855: AO353_24855 - aldehyde dehydrogenase, at 5,482,134 to 5,483,549 _24855 Position (kb) 5480 5481 5482 5483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5480.058 kb on + strand, within AO353_24845at 5480.058 kb on + strand, within AO353_24845at 5480.059 kb on - strand, within AO353_24845at 5480.059 kb on - strand, within AO353_24845at 5480.444 kb on + strand, within AO353_24845at 5480.444 kb on + strand, within AO353_24845at 5480.445 kb on - strand, within AO353_24845at 5480.445 kb on - strand, within AO353_24845at 5480.456 kb on + strand, within AO353_24845at 5480.456 kb on + strand, within AO353_24845at 5480.456 kb on + strand, within AO353_24845at 5480.456 kb on + strand, within AO353_24845at 5480.457 kb on - strand, within AO353_24845at 5480.457 kb on - strand, within AO353_24845at 5480.603 kb on + strand, within AO353_24845at 5480.603 kb on + strand, within AO353_24845at 5480.935 kb on - strandat 5480.977 kb on + strandat 5480.977 kb on + strandat 5480.978 kb on - strandat 5480.978 kb on - strandat 5481.326 kb on + strand, within AO353_24850at 5481.326 kb on + strand, within AO353_24850at 5481.327 kb on - strand, within AO353_24850at 5481.327 kb on - strand, within AO353_24850at 5481.335 kb on + strand, within AO353_24850at 5481.336 kb on - strand, within AO353_24850at 5481.336 kb on - strand, within AO353_24850at 5481.336 kb on - strand, within AO353_24850at 5481.336 kb on - strand, within AO353_24850at 5481.336 kb on - strand, within AO353_24850at 5481.336 kb on - strand, within AO353_24850at 5481.569 kb on + strand, within AO353_24850at 5481.570 kb on - strand, within AO353_24850at 5481.752 kb on + strand, within AO353_24850at 5481.752 kb on + strand, within AO353_24850at 5481.752 kb on + strand, within AO353_24850at 5481.752 kb on + strand, within AO353_24850at 5481.753 kb on - strand, within AO353_24850at 5481.753 kb on - strand, within AO353_24850at 5482.039 kb on + strandat 5482.139 kb on + strandat 5482.139 kb on + strandat 5482.139 kb on + strandat 5482.139 kb on + strandat 5482.140 kb on - strandat 5482.140 kb on - strandat 5482.140 kb on - strandat 5482.140 kb on - strandat 5482.140 kb on - strandat 5482.143 kb on + strandat 5482.144 kb on - strandat 5482.144 kb on - strandat 5482.144 kb on - strandat 5482.144 kb on - strandat 5482.144 kb on - strandat 5482.144 kb on - strandat 5482.289 kb on + strand, within AO353_24855at 5482.290 kb on - strand, within AO353_24855at 5482.290 kb on - strand, within AO353_24855at 5482.290 kb on - strand, within AO353_24855at 5482.473 kb on + strand, within AO353_24855at 5482.473 kb on + strand, within AO353_24855at 5482.473 kb on + strand, within AO353_24855at 5482.474 kb on - strand, within AO353_24855at 5482.474 kb on - strand, within AO353_24855at 5482.474 kb on - strand, within AO353_24855at 5482.474 kb on - strand, within AO353_24855at 5482.878 kb on - strand, within AO353_24855at 5483.118 kb on - strand, within AO353_24855at 5483.118 kb on - strand, within AO353_24855at 5483.130 kb on + strand, within AO353_24855at 5483.131 kb on - strand, within AO353_24855at 5483.131 kb on - strand, within AO353_24855at 5483.131 kb on - strand, within AO353_24855

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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5,480,058 + AO353_24845 0.48 +0.7
5,480,058 + AO353_24845 0.48 +0.0
5,480,059 - AO353_24845 0.48 +2.5
5,480,059 - AO353_24845 0.48 -1.3
5,480,444 + AO353_24845 0.72 -0.3
5,480,444 + AO353_24845 0.72 -0.3
5,480,445 - AO353_24845 0.72 +2.9
5,480,445 - AO353_24845 0.72 -0.1
5,480,456 + AO353_24845 0.73 -0.0
5,480,456 + AO353_24845 0.73 -1.3
5,480,456 + AO353_24845 0.73 -0.0
5,480,456 + AO353_24845 0.73 +2.2
5,480,457 - AO353_24845 0.73 -2.9
5,480,457 - AO353_24845 0.73 +1.3
5,480,603 + AO353_24845 0.82 -1.3
5,480,603 + AO353_24845 0.82 -0.5
5,480,935 - +0.1
5,480,977 + +0.3
5,480,977 + -1.0
5,480,978 - -0.6
5,480,978 - +1.0
5,481,326 + AO353_24850 0.31 +0.7
5,481,326 + AO353_24850 0.31 +1.0
5,481,327 - AO353_24850 0.32 +0.3
5,481,327 - AO353_24850 0.32 +1.7
5,481,335 + AO353_24850 0.32 +2.7
5,481,336 - AO353_24850 0.32 +0.4
5,481,336 - AO353_24850 0.32 +0.1
5,481,336 - AO353_24850 0.32 +1.3
5,481,336 - AO353_24850 0.32 -1.9
5,481,336 - AO353_24850 0.32 -0.7
5,481,336 - AO353_24850 0.32 +1.7
5,481,569 + AO353_24850 0.52 +1.3
5,481,570 - AO353_24850 0.52 +1.3
5,481,752 + AO353_24850 0.67 +1.3
5,481,752 + AO353_24850 0.67 -0.5
5,481,752 + AO353_24850 0.67 -0.3
5,481,752 + AO353_24850 0.67 +1.3
5,481,753 - AO353_24850 0.67 +0.4
5,481,753 - AO353_24850 0.67 -1.9
5,482,039 + +0.4
5,482,139 + +0.3
5,482,139 + +1.5
5,482,139 + +1.7
5,482,139 + +1.0
5,482,140 - -0.3
5,482,140 - -0.3
5,482,140 - +1.1
5,482,140 - +1.7
5,482,140 - +1.7
5,482,143 + +1.4
5,482,144 - -2.3
5,482,144 - +0.9
5,482,144 - -0.6
5,482,144 - +0.8
5,482,144 - +0.1
5,482,144 - -0.3
5,482,289 + AO353_24855 0.11 +1.5
5,482,290 - AO353_24855 0.11 -0.1
5,482,290 - AO353_24855 0.11 +0.3
5,482,290 - AO353_24855 0.11 +1.4
5,482,473 + AO353_24855 0.24 +0.2
5,482,473 + AO353_24855 0.24 +1.9
5,482,473 + AO353_24855 0.24 +1.7
5,482,474 - AO353_24855 0.24 -0.3
5,482,474 - AO353_24855 0.24 +2.7
5,482,474 - AO353_24855 0.24 +0.3
5,482,474 - AO353_24855 0.24 +0.4
5,482,878 - AO353_24855 0.53 -0.3
5,483,118 - AO353_24855 0.69 +0.7
5,483,118 - AO353_24855 0.69 +1.7
5,483,130 + AO353_24855 0.70 -0.5
5,483,131 - AO353_24855 0.70 +1.7
5,483,131 - AO353_24855 0.70 +0.1
5,483,131 - AO353_24855 0.70 +1.3

Or see this region's nucleotide sequence