Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24560

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24550 and AO353_24555 are separated by 39 nucleotidesAO353_24555 and AO353_24560 are separated by 120 nucleotidesAO353_24560 and AO353_24565 are separated by 177 nucleotides AO353_24550: AO353_24550 - hypothetical protein, at 5,394,792 to 5,394,983 _24550 AO353_24555: AO353_24555 - hypothetical protein, at 5,395,023 to 5,395,541 _24555 AO353_24560: AO353_24560 - transcriptional regulator, at 5,395,662 to 5,395,970 _24560 AO353_24565: AO353_24565 - hypothetical protein, at 5,396,148 to 5,397,905 _24565 Position (kb) 5395 5396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5394.822 kb on + strand, within AO353_24550at 5394.823 kb on - strand, within AO353_24550at 5394.835 kb on - strand, within AO353_24550at 5394.844 kb on + strand, within AO353_24550at 5394.880 kb on + strand, within AO353_24550at 5394.881 kb on - strand, within AO353_24550at 5394.894 kb on + strand, within AO353_24550at 5394.976 kb on + strandat 5394.976 kb on + strandat 5394.976 kb on + strandat 5394.977 kb on - strandat 5394.977 kb on - strandat 5394.977 kb on - strandat 5395.024 kb on + strandat 5395.024 kb on + strandat 5395.025 kb on - strandat 5395.064 kb on - strandat 5395.109 kb on + strand, within AO353_24555at 5395.109 kb on + strand, within AO353_24555at 5395.110 kb on - strand, within AO353_24555at 5395.117 kb on + strand, within AO353_24555at 5395.117 kb on + strand, within AO353_24555at 5395.117 kb on + strand, within AO353_24555at 5395.118 kb on - strand, within AO353_24555at 5395.118 kb on - strand, within AO353_24555at 5395.118 kb on - strand, within AO353_24555at 5395.118 kb on - strand, within AO353_24555at 5395.162 kb on + strand, within AO353_24555at 5395.163 kb on - strand, within AO353_24555at 5395.213 kb on + strand, within AO353_24555at 5395.213 kb on + strand, within AO353_24555at 5395.213 kb on + strand, within AO353_24555at 5395.230 kb on - strand, within AO353_24555at 5395.230 kb on - strand, within AO353_24555at 5395.369 kb on + strand, within AO353_24555at 5395.369 kb on + strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.468 kb on + strand, within AO353_24555at 5395.469 kb on - strand, within AO353_24555at 5395.469 kb on - strandat 5395.469 kb on - strand, within AO353_24555at 5395.469 kb on - strand, within AO353_24555at 5395.522 kb on - strandat 5395.581 kb on + strandat 5395.597 kb on + strandat 5395.604 kb on + strandat 5395.667 kb on + strandat 5395.667 kb on + strandat 5395.702 kb on + strand, within AO353_24560at 5395.702 kb on + strand, within AO353_24560at 5395.702 kb on + strand, within AO353_24560at 5395.702 kb on + strand, within AO353_24560at 5395.703 kb on - strand, within AO353_24560at 5395.703 kb on - strand, within AO353_24560at 5395.780 kb on - strand, within AO353_24560at 5395.854 kb on + strand, within AO353_24560at 5395.854 kb on + strand, within AO353_24560at 5395.855 kb on - strand, within AO353_24560at 5395.855 kb on - strand, within AO353_24560at 5395.973 kb on + strandat 5395.973 kb on + strandat 5396.020 kb on + strandat 5396.060 kb on + strandat 5396.060 kb on + strandat 5396.061 kb on - strandat 5396.091 kb on + strandat 5396.091 kb on + strandat 5396.091 kb on + strandat 5396.091 kb on + strandat 5396.091 kb on + strandat 5396.092 kb on + strandat 5396.095 kb on + strandat 5396.100 kb on + strandat 5396.101 kb on - strandat 5396.124 kb on + strandat 5396.149 kb on + strandat 5396.237 kb on + strandat 5396.237 kb on + strandat 5396.237 kb on + strandat 5396.239 kb on + strandat 5396.240 kb on - strandat 5396.240 kb on - strandat 5396.340 kb on + strand, within AO353_24565at 5396.364 kb on + strand, within AO353_24565at 5396.481 kb on + strand, within AO353_24565at 5396.481 kb on + strand, within AO353_24565at 5396.482 kb on - strand, within AO353_24565at 5396.482 kb on - strand, within AO353_24565at 5396.482 kb on - strand, within AO353_24565at 5396.482 kb on - strand, within AO353_24565at 5396.482 kb on - strand, within AO353_24565at 5396.482 kb on - strand, within AO353_24565at 5396.482 kb on - strand, within AO353_24565at 5396.618 kb on + strand, within AO353_24565at 5396.619 kb on - strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.689 kb on + strand, within AO353_24565at 5396.690 kb on - strand, within AO353_24565at 5396.690 kb on - strand, within AO353_24565at 5396.690 kb on - strand, within AO353_24565at 5396.690 kb on - strand, within AO353_24565at 5396.690 kb on - strand, within AO353_24565at 5396.814 kb on + strand, within AO353_24565at 5396.814 kb on + strand, within AO353_24565at 5396.814 kb on + strand, within AO353_24565at 5396.814 kb on + strand, within AO353_24565at 5396.815 kb on - strand, within AO353_24565at 5396.815 kb on - strand, within AO353_24565at 5396.815 kb on - strand, within AO353_24565at 5396.815 kb on - strand, within AO353_24565at 5396.815 kb on - strand, within AO353_24565at 5396.836 kb on + strand, within AO353_24565at 5396.836 kb on + strand, within AO353_24565at 5396.837 kb on - strand, within AO353_24565at 5396.837 kb on - strand, within AO353_24565at 5396.837 kb on - strand, within AO353_24565at 5396.884 kb on + strand, within AO353_24565at 5396.884 kb on + strand, within AO353_24565at 5396.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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5,394,822 + AO353_24550 0.16 +0.4
5,394,823 - AO353_24550 0.16 +0.3
5,394,835 - AO353_24550 0.22 -1.6
5,394,844 + AO353_24550 0.27 -0.7
5,394,880 + AO353_24550 0.46 +0.7
5,394,881 - AO353_24550 0.46 -1.3
5,394,894 + AO353_24550 0.53 +0.7
5,394,976 + +2.0
5,394,976 + +0.7
5,394,976 + -1.3
5,394,977 - -0.9
5,394,977 - -0.3
5,394,977 - +1.3
5,395,024 + -0.3
5,395,024 + +0.3
5,395,025 - -0.9
5,395,064 - +0.6
5,395,109 + AO353_24555 0.17 -0.1
5,395,109 + AO353_24555 0.17 -3.1
5,395,110 - AO353_24555 0.17 +0.2
5,395,117 + AO353_24555 0.18 +1.3
5,395,117 + AO353_24555 0.18 +1.9
5,395,117 + AO353_24555 0.18 +0.7
5,395,118 - AO353_24555 0.18 -0.0
5,395,118 - AO353_24555 0.18 +0.9
5,395,118 - AO353_24555 0.18 +1.3
5,395,118 - AO353_24555 0.18 -0.3
5,395,162 + AO353_24555 0.27 -1.3
5,395,163 - AO353_24555 0.27 +0.7
5,395,213 + AO353_24555 0.37 -0.3
5,395,213 + AO353_24555 0.37 +1.5
5,395,213 + AO353_24555 0.37 -0.3
5,395,230 - AO353_24555 0.40 +2.3
5,395,230 - AO353_24555 0.40 -0.3
5,395,369 + AO353_24555 0.67 +0.7
5,395,369 + AO353_24555 0.67 -0.0
5,395,370 - AO353_24555 0.67 +0.0
5,395,370 - AO353_24555 0.67 +0.2
5,395,370 - AO353_24555 0.67 -0.3
5,395,370 - AO353_24555 0.67 +0.7
5,395,370 - AO353_24555 0.67 -0.3
5,395,468 + AO353_24555 0.86 +0.7
5,395,469 - AO353_24555 0.86 +1.0
5,395,469 - +1.3
5,395,469 - AO353_24555 0.86 +0.2
5,395,469 - AO353_24555 0.86 -0.9
5,395,522 - +1.7
5,395,581 + -0.9
5,395,597 + +0.2
5,395,604 + +1.0
5,395,667 + +0.7
5,395,667 + +1.3
5,395,702 + AO353_24560 0.13 +0.4
5,395,702 + AO353_24560 0.13 +0.1
5,395,702 + AO353_24560 0.13 -0.6
5,395,702 + AO353_24560 0.13 -1.9
5,395,703 - AO353_24560 0.13 -0.7
5,395,703 - AO353_24560 0.13 -0.3
5,395,780 - AO353_24560 0.38 +0.4
5,395,854 + AO353_24560 0.62 -0.9
5,395,854 + AO353_24560 0.62 +0.7
5,395,855 - AO353_24560 0.62 -1.3
5,395,855 - AO353_24560 0.62 -0.3
5,395,973 + +1.5
5,395,973 + +0.1
5,396,020 + +1.3
5,396,060 + -0.3
5,396,060 + -0.1
5,396,061 - -0.3
5,396,091 + +0.7
5,396,091 + -1.0
5,396,091 + -0.7
5,396,091 + +1.3
5,396,091 + +1.4
5,396,092 + -0.3
5,396,095 + -1.3
5,396,100 + +2.0
5,396,101 - +0.3
5,396,124 + +2.3
5,396,149 + -0.7
5,396,237 + +0.7
5,396,237 + -2.3
5,396,237 + +0.7
5,396,239 + +0.7
5,396,240 - -1.3
5,396,240 - +0.9
5,396,340 + AO353_24565 0.11 +0.1
5,396,364 + AO353_24565 0.12 -0.3
5,396,481 + AO353_24565 0.19 +0.6
5,396,481 + AO353_24565 0.19 +0.8
5,396,482 - AO353_24565 0.19 +2.0
5,396,482 - AO353_24565 0.19 -0.7
5,396,482 - AO353_24565 0.19 +0.3
5,396,482 - AO353_24565 0.19 +0.7
5,396,482 - AO353_24565 0.19 +0.5
5,396,482 - AO353_24565 0.19 -1.0
5,396,482 - AO353_24565 0.19 -0.3
5,396,618 + AO353_24565 0.27 +0.7
5,396,619 - AO353_24565 0.27 +0.1
5,396,689 + AO353_24565 0.31 -0.3
5,396,689 + AO353_24565 0.31 -1.3
5,396,689 + AO353_24565 0.31 +0.3
5,396,689 + AO353_24565 0.31 +0.7
5,396,689 + AO353_24565 0.31 +0.9
5,396,689 + AO353_24565 0.31 -0.9
5,396,689 + AO353_24565 0.31 -0.3
5,396,689 + AO353_24565 0.31 +0.7
5,396,689 + AO353_24565 0.31 -0.9
5,396,689 + AO353_24565 0.31 +0.4
5,396,689 + AO353_24565 0.31 +0.7
5,396,690 - AO353_24565 0.31 -0.5
5,396,690 - AO353_24565 0.31 +0.2
5,396,690 - AO353_24565 0.31 +0.9
5,396,690 - AO353_24565 0.31 -1.9
5,396,690 - AO353_24565 0.31 -0.3
5,396,814 + AO353_24565 0.38 -0.9
5,396,814 + AO353_24565 0.38 -0.6
5,396,814 + AO353_24565 0.38 +0.7
5,396,814 + AO353_24565 0.38 +1.3
5,396,815 - AO353_24565 0.38 +0.7
5,396,815 - AO353_24565 0.38 -0.9
5,396,815 - AO353_24565 0.38 +0.7
5,396,815 - AO353_24565 0.38 +0.5
5,396,815 - AO353_24565 0.38 -0.3
5,396,836 + AO353_24565 0.39 +0.9
5,396,836 + AO353_24565 0.39 -0.7
5,396,837 - AO353_24565 0.39 +1.5
5,396,837 - AO353_24565 0.39 -0.3
5,396,837 - AO353_24565 0.39 -0.3
5,396,884 + AO353_24565 0.42 +0.9
5,396,884 + AO353_24565 0.42 +0.3
5,396,953 - +1.3

Or see this region's nucleotide sequence