Experiment: Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23485 and AO353_23490 are separated by 99 nucleotides AO353_23490 and AO353_23495 are separated by 65 nucleotides AO353_23495 and AO353_23500 are separated by 91 nucleotides AO353_23500 and AO353_23505 are separated by 9 nucleotides AO353_23505 and AO353_23510 are separated by 107 nucleotides
AO353_23485: AO353_23485 - lytic transglycosylase, at 5,145,465 to 5,146,898
_23485
AO353_23490: AO353_23490 - hydroxyacylglutathione hydrolase, at 5,146,998 to 5,147,765
_23490
AO353_23495: AO353_23495 - SAM-dependent methyltransferase, at 5,147,831 to 5,148,589
_23495
AO353_23500: AO353_23500 - ribonuclease H, at 5,148,681 to 5,149,133
_23500
AO353_23505: AO353_23505 - hypothetical protein, at 5,149,143 to 5,149,457
_23505
AO353_23510: AO353_23510 - transcriptional regulator, at 5,149,565 to 5,150,455
_23510
Position (kb)
5147
5148
5149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5146.881 kb on - strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.887 kb on - strand at 5146.887 kb on - strand at 5146.887 kb on - strand at 5146.910 kb on + strand at 5146.939 kb on + strand at 5146.987 kb on - strand at 5146.999 kb on + strand at 5147.000 kb on - strand at 5147.000 kb on - strand at 5147.000 kb on - strand at 5147.006 kb on + strand at 5147.006 kb on + strand at 5147.006 kb on + strand at 5147.076 kb on + strand, within AO353_23490 at 5147.109 kb on + strand, within AO353_23490 at 5147.109 kb on + strand, within AO353_23490 at 5147.110 kb on - strand, within AO353_23490 at 5147.123 kb on + strand, within AO353_23490 at 5147.123 kb on + strand, within AO353_23490 at 5147.123 kb on + strand, within AO353_23490 at 5147.123 kb on + strand, within AO353_23490 at 5147.124 kb on - strand, within AO353_23490 at 5147.124 kb on - strand, within AO353_23490 at 5147.124 kb on - strand, within AO353_23490 at 5147.175 kb on + strand, within AO353_23490 at 5147.176 kb on - strand, within AO353_23490 at 5147.176 kb on - strand, within AO353_23490 at 5147.260 kb on + strand, within AO353_23490 at 5147.260 kb on + strand, within AO353_23490 at 5147.260 kb on + strand, within AO353_23490 at 5147.261 kb on - strand at 5147.261 kb on - strand, within AO353_23490 at 5147.261 kb on - strand, within AO353_23490 at 5147.276 kb on - strand, within AO353_23490 at 5147.276 kb on - strand, within AO353_23490 at 5147.276 kb on - strand, within AO353_23490 at 5147.339 kb on + strand, within AO353_23490 at 5147.340 kb on - strand, within AO353_23490 at 5147.407 kb on + strand, within AO353_23490 at 5147.407 kb on + strand, within AO353_23490 at 5147.407 kb on + strand, within AO353_23490 at 5147.408 kb on - strand, within AO353_23490 at 5147.408 kb on - strand, within AO353_23490 at 5147.408 kb on - strand, within AO353_23490 at 5147.408 kb on - strand, within AO353_23490 at 5147.410 kb on + strand, within AO353_23490 at 5147.411 kb on - strand, within AO353_23490 at 5147.411 kb on - strand, within AO353_23490 at 5147.411 kb on - strand, within AO353_23490 at 5147.446 kb on + strand, within AO353_23490 at 5147.447 kb on - strand, within AO353_23490 at 5147.469 kb on + strand, within AO353_23490 at 5147.536 kb on + strand, within AO353_23490 at 5147.712 kb on + strand at 5147.712 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.760 kb on + strand at 5147.760 kb on + strand at 5147.760 kb on + strand at 5147.802 kb on + strand at 5147.802 kb on + strand at 5147.802 kb on + strand at 5147.803 kb on - strand at 5147.803 kb on - strand at 5147.803 kb on - strand at 5148.078 kb on + strand, within AO353_23495 at 5148.078 kb on + strand at 5148.464 kb on + strand, within AO353_23495 at 5148.465 kb on - strand, within AO353_23495 at 5148.465 kb on - strand, within AO353_23495 at 5148.468 kb on + strand, within AO353_23495 at 5148.590 kb on + strand at 5148.591 kb on - strand at 5148.599 kb on + strand at 5148.599 kb on + strand at 5148.600 kb on - strand at 5148.600 kb on - strand at 5148.694 kb on + strand at 5148.694 kb on + strand at 5148.694 kb on + strand at 5148.695 kb on - strand at 5148.695 kb on - strand at 5148.695 kb on - strand at 5148.874 kb on + strand, within AO353_23500 at 5148.897 kb on + strand, within AO353_23500 at 5149.119 kb on + strand at 5149.119 kb on + strand at 5149.184 kb on - strand, within AO353_23505 at 5149.328 kb on + strand, within AO353_23505 at 5149.328 kb on + strand, within AO353_23505 at 5149.434 kb on + strand at 5149.434 kb on + strand at 5149.434 kb on + strand at 5149.435 kb on - strand at 5149.435 kb on - strand at 5149.435 kb on - strand at 5149.435 kb on - strand at 5149.436 kb on + strand at 5149.436 kb on + strand at 5149.436 kb on + strand at 5149.437 kb on - strand at 5149.482 kb on + strand at 5149.524 kb on + strand at 5149.524 kb on + strand at 5149.525 kb on - strand at 5149.525 kb on - strand at 5149.525 kb on - strand at 5149.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml remove 5,146,881 - -0.7 5,146,886 + -0.3 5,146,886 + -1.3 5,146,886 + +0.9 5,146,886 + +1.1 5,146,886 + +0.7 5,146,886 + +0.9 5,146,887 - +1.3 5,146,887 - +0.0 5,146,887 - -0.9 5,146,910 + -0.6 5,146,939 + +1.7 5,146,987 - -0.9 5,146,999 + -1.0 5,147,000 - +0.0 5,147,000 - +0.7 5,147,000 - +2.0 5,147,006 + +0.5 5,147,006 + +1.7 5,147,006 + -0.9 5,147,076 + AO353_23490 0.10 -1.7 5,147,109 + AO353_23490 0.14 +1.9 5,147,109 + AO353_23490 0.14 +1.1 5,147,110 - AO353_23490 0.15 +2.7 5,147,123 + AO353_23490 0.16 +0.3 5,147,123 + AO353_23490 0.16 +1.3 5,147,123 + AO353_23490 0.16 +1.2 5,147,123 + AO353_23490 0.16 -0.3 5,147,124 - AO353_23490 0.16 +1.1 5,147,124 - AO353_23490 0.16 -0.3 5,147,124 - AO353_23490 0.16 +0.7 5,147,175 + AO353_23490 0.23 +0.5 5,147,176 - AO353_23490 0.23 +1.4 5,147,176 - AO353_23490 0.23 +1.3 5,147,260 + AO353_23490 0.34 +0.9 5,147,260 + AO353_23490 0.34 -0.3 5,147,260 + AO353_23490 0.34 -0.3 5,147,261 - -1.3 5,147,261 - AO353_23490 0.34 +0.5 5,147,261 - AO353_23490 0.34 +1.3 5,147,276 - AO353_23490 0.36 +0.9 5,147,276 - AO353_23490 0.36 +1.4 5,147,276 - AO353_23490 0.36 -0.3 5,147,339 + AO353_23490 0.44 -0.3 5,147,340 - AO353_23490 0.45 +0.1 5,147,407 + AO353_23490 0.53 +0.4 5,147,407 + AO353_23490 0.53 -0.3 5,147,407 + AO353_23490 0.53 +2.3 5,147,408 - AO353_23490 0.53 +0.7 5,147,408 - AO353_23490 0.53 +0.7 5,147,408 - AO353_23490 0.53 +0.3 5,147,408 - AO353_23490 0.53 +0.1 5,147,410 + AO353_23490 0.54 +1.0 5,147,411 - AO353_23490 0.54 -0.9 5,147,411 - AO353_23490 0.54 -0.3 5,147,411 - AO353_23490 0.54 +1.5 5,147,446 + AO353_23490 0.58 +0.1 5,147,447 - AO353_23490 0.58 -0.3 5,147,469 + AO353_23490 0.61 +1.7 5,147,536 + AO353_23490 0.70 -0.7 5,147,712 + +1.3 5,147,712 + -2.3 5,147,725 + +1.0 5,147,725 + +1.7 5,147,725 + +0.4 5,147,725 + +1.0 5,147,725 + +1.1 5,147,725 + +1.3 5,147,725 + -0.3 5,147,725 + +0.0 5,147,725 + -0.3 5,147,725 + +1.3 5,147,725 + -1.3 5,147,725 + +1.3 5,147,726 - -2.6 5,147,726 - -0.3 5,147,726 - +0.7 5,147,726 - -0.1 5,147,726 - -1.3 5,147,726 - -0.3 5,147,760 + -0.3 5,147,760 + +0.3 5,147,760 + -0.1 5,147,802 + +0.7 5,147,802 + -1.3 5,147,802 + +0.1 5,147,803 - -2.1 5,147,803 - -1.3 5,147,803 - -2.9 5,148,078 + AO353_23495 0.33 +0.4 5,148,078 + -0.3 5,148,464 + AO353_23495 0.83 +0.7 5,148,465 - AO353_23495 0.84 -0.3 5,148,465 - AO353_23495 0.84 -2.6 5,148,468 + AO353_23495 0.84 -1.3 5,148,590 + -1.3 5,148,591 - +2.0 5,148,599 + -0.3 5,148,599 + -0.9 5,148,600 - -0.3 5,148,600 - -1.6 5,148,694 + -0.3 5,148,694 + +3.0 5,148,694 + +1.5 5,148,695 - -1.9 5,148,695 - -1.3 5,148,695 - +1.7 5,148,874 + AO353_23500 0.43 +2.9 5,148,897 + AO353_23500 0.48 -0.3 5,149,119 + -2.3 5,149,119 + -1.3 5,149,184 - AO353_23505 0.13 +1.7 5,149,328 + AO353_23505 0.59 -1.3 5,149,328 + AO353_23505 0.59 +0.7 5,149,434 + -0.9 5,149,434 + +1.3 5,149,434 + -1.3 5,149,435 - +1.3 5,149,435 - +1.4 5,149,435 - +0.3 5,149,435 - +0.3 5,149,436 + -1.3 5,149,436 + +0.7 5,149,436 + -0.9 5,149,437 - -1.3 5,149,482 + +0.7 5,149,524 + +0.9 5,149,524 + -0.9 5,149,525 - +0.1 5,149,525 - +1.3 5,149,525 - +0.3 5,149,546 + +0.9
Or see this region's nucleotide sequence