Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22375

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22370 and AO353_22375 are separated by 437 nucleotidesAO353_22375 and AO353_22380 are separated by 3 nucleotides AO353_22370: AO353_22370 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,899,919 to 4,901,103 _22370 AO353_22375: AO353_22375 - cytochrome c-550 PedF, at 4,901,541 to 4,902,002 _22375 AO353_22380: AO353_22380 - amino acid ABC transporter substrate-binding protein, at 4,902,006 to 4,902,881 _22380 Position (kb) 4901 4902 4903Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4900.859 kb on + strand, within AO353_22370at 4900.860 kb on - strand, within AO353_22370at 4901.072 kb on + strandat 4901.072 kb on + strandat 4901.073 kb on - strandat 4901.073 kb on - strandat 4901.091 kb on + strandat 4901.091 kb on + strandat 4901.092 kb on - strandat 4901.092 kb on - strandat 4901.121 kb on - strandat 4901.121 kb on - strandat 4901.121 kb on - strandat 4901.133 kb on + strandat 4901.133 kb on + strandat 4901.133 kb on + strandat 4901.134 kb on - strandat 4901.134 kb on - strandat 4901.158 kb on + strandat 4901.159 kb on - strandat 4901.169 kb on + strandat 4901.170 kb on - strandat 4901.194 kb on + strandat 4901.194 kb on + strandat 4901.195 kb on - strandat 4901.195 kb on - strandat 4901.219 kb on + strandat 4901.220 kb on - strandat 4901.220 kb on - strandat 4901.269 kb on + strandat 4901.269 kb on + strandat 4901.270 kb on - strandat 4901.379 kb on - strandat 4901.379 kb on - strandat 4901.379 kb on - strandat 4901.379 kb on - strandat 4901.422 kb on + strandat 4901.423 kb on - strandat 4901.425 kb on + strandat 4901.426 kb on - strandat 4901.483 kb on + strandat 4901.483 kb on + strandat 4901.483 kb on + strandat 4901.484 kb on - strandat 4901.484 kb on - strandat 4901.484 kb on - strandat 4901.505 kb on + strandat 4901.505 kb on + strandat 4901.505 kb on + strandat 4901.506 kb on - strandat 4901.506 kb on - strandat 4901.513 kb on + strandat 4901.513 kb on + strandat 4901.513 kb on + strandat 4901.513 kb on + strandat 4901.514 kb on - strandat 4901.514 kb on - strandat 4901.514 kb on - strandat 4901.769 kb on + strand, within AO353_22375at 4901.769 kb on + strand, within AO353_22375at 4901.770 kb on - strand, within AO353_22375at 4901.770 kb on - strand, within AO353_22375at 4901.770 kb on - strand, within AO353_22375at 4901.916 kb on + strand, within AO353_22375at 4901.917 kb on - strand, within AO353_22375at 4901.917 kb on - strand, within AO353_22375at 4901.937 kb on + strand, within AO353_22375at 4901.938 kb on - strand, within AO353_22375at 4901.974 kb on - strandat 4902.138 kb on + strand, within AO353_22380at 4902.273 kb on + strand, within AO353_22380at 4902.273 kb on + strand, within AO353_22380at 4902.274 kb on - strand, within AO353_22380at 4902.274 kb on - strand, within AO353_22380at 4902.274 kb on - strand, within AO353_22380at 4902.274 kb on - strand, within AO353_22380at 4902.336 kb on + strand, within AO353_22380at 4902.349 kb on - strandat 4902.394 kb on + strand, within AO353_22380at 4902.394 kb on + strand, within AO353_22380at 4902.394 kb on + strand, within AO353_22380at 4902.395 kb on - strand, within AO353_22380at 4902.395 kb on - strand, within AO353_22380at 4902.395 kb on - strand, within AO353_22380at 4902.395 kb on - strand, within AO353_22380at 4902.395 kb on - strand, within AO353_22380at 4902.528 kb on + strand, within AO353_22380at 4902.566 kb on + strand, within AO353_22380at 4902.567 kb on - strand, within AO353_22380at 4902.709 kb on - strand, within AO353_22380at 4902.777 kb on + strand, within AO353_22380at 4902.777 kb on + strand, within AO353_22380at 4902.835 kb on - strandat 4902.843 kb on + strandat 4902.843 kb on + strandat 4902.844 kb on - strandat 4902.844 kb on - strandat 4902.873 kb on + strandat 4902.873 kb on + strandat 4902.873 kb on + strandat 4902.873 kb on + strandat 4902.873 kb on + strandat 4902.874 kb on - strandat 4902.874 kb on - strandat 4902.874 kb on - strandat 4902.874 kb on - strandat 4902.874 kb on - strandat 4902.962 kb on + strandat 4902.962 kb on + strandat 4902.962 kb on + strandat 4902.963 kb on - strandat 4902.963 kb on - strandat 4902.963 kb on - strandat 4902.966 kb on + strandat 4902.966 kb on + strandat 4902.966 kb on + strandat 4902.966 kb on + strandat 4902.966 kb on + strandat 4902.966 kb on + strandat 4902.966 kb on + strandat 4902.966 kb on + strandat 4902.966 kb on + strandat 4902.966 kb on + strandat 4902.967 kb on - strandat 4902.967 kb on - strandat 4902.967 kb on - strandat 4902.967 kb on - strandat 4902.967 kb on - strandat 4902.967 kb on - strandat 4902.969 kb on + strandat 4902.970 kb on - strandat 4902.977 kb on + strandat 4902.977 kb on + strandat 4902.978 kb on - strandat 4902.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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4,900,859 + AO353_22370 0.79 +1.6
4,900,860 - AO353_22370 0.79 +1.1
4,901,072 + -0.2
4,901,072 + +1.1
4,901,073 - +1.3
4,901,073 - -0.2
4,901,091 + -0.2
4,901,091 + +0.3
4,901,092 - +1.4
4,901,092 - +0.5
4,901,121 - -0.5
4,901,121 - -0.1
4,901,121 - -0.6
4,901,133 + -0.2
4,901,133 + -0.6
4,901,133 + +2.9
4,901,134 - -0.2
4,901,134 - +0.8
4,901,158 + -1.2
4,901,159 - +0.4
4,901,169 + +1.1
4,901,170 - +1.8
4,901,194 + +1.4
4,901,194 + -0.2
4,901,195 - +2.1
4,901,195 - +0.4
4,901,219 + -0.2
4,901,220 - +1.1
4,901,220 - -1.2
4,901,269 + -1.2
4,901,269 + -0.5
4,901,270 - -0.7
4,901,379 - +0.8
4,901,379 - +0.8
4,901,379 - +1.7
4,901,379 - +0.8
4,901,422 + -0.6
4,901,423 - -0.2
4,901,425 + +1.1
4,901,426 - -0.2
4,901,483 + +0.8
4,901,483 + +2.4
4,901,483 + +0.7
4,901,484 - +0.8
4,901,484 - -0.8
4,901,484 - -0.5
4,901,505 + -0.2
4,901,505 + +0.1
4,901,505 + +0.6
4,901,506 - -0.2
4,901,506 - -0.2
4,901,513 + +0.8
4,901,513 + -0.8
4,901,513 + +1.1
4,901,513 + -0.2
4,901,514 - +1.4
4,901,514 - +0.8
4,901,514 - +1.8
4,901,769 + AO353_22375 0.49 +0.1
4,901,769 + AO353_22375 0.49 -0.2
4,901,770 - AO353_22375 0.50 -0.2
4,901,770 - AO353_22375 0.50 -0.6
4,901,770 - AO353_22375 0.50 -0.2
4,901,916 + AO353_22375 0.81 -0.5
4,901,917 - AO353_22375 0.81 -1.8
4,901,917 - AO353_22375 0.81 -0.4
4,901,937 + AO353_22375 0.86 -0.2
4,901,938 - AO353_22375 0.86 +1.4
4,901,974 - -0.2
4,902,138 + AO353_22380 0.15 +0.6
4,902,273 + AO353_22380 0.30 -0.8
4,902,273 + AO353_22380 0.30 +0.3
4,902,274 - AO353_22380 0.31 +0.8
4,902,274 - AO353_22380 0.31 +0.4
4,902,274 - AO353_22380 0.31 -0.2
4,902,274 - AO353_22380 0.31 +0.6
4,902,336 + AO353_22380 0.38 -1.2
4,902,349 - +2.4
4,902,394 + AO353_22380 0.44 -0.6
4,902,394 + AO353_22380 0.44 +0.4
4,902,394 + AO353_22380 0.44 -0.2
4,902,395 - AO353_22380 0.44 -0.2
4,902,395 - AO353_22380 0.44 -0.2
4,902,395 - AO353_22380 0.44 -0.2
4,902,395 - AO353_22380 0.44 +0.6
4,902,395 - AO353_22380 0.44 +0.4
4,902,528 + AO353_22380 0.60 +0.1
4,902,566 + AO353_22380 0.64 +1.9
4,902,567 - AO353_22380 0.64 -2.6
4,902,709 - AO353_22380 0.80 +0.4
4,902,777 + AO353_22380 0.88 +1.4
4,902,777 + AO353_22380 0.88 +0.4
4,902,835 - -0.8
4,902,843 + -0.2
4,902,843 + -0.8
4,902,844 - -0.2
4,902,844 - +0.5
4,902,873 + +1.0
4,902,873 + +1.6
4,902,873 + -0.5
4,902,873 + +1.5
4,902,873 + -1.2
4,902,874 - -0.2
4,902,874 - -0.6
4,902,874 - -0.2
4,902,874 - +0.1
4,902,874 - -0.2
4,902,962 + -0.2
4,902,962 + -0.2
4,902,962 + -0.2
4,902,963 - +1.1
4,902,963 - +0.3
4,902,963 - -0.2
4,902,966 + -0.2
4,902,966 + -0.2
4,902,966 + +1.0
4,902,966 + +0.5
4,902,966 + +0.4
4,902,966 + -1.2
4,902,966 + +0.9
4,902,966 + +0.1
4,902,966 + -0.5
4,902,966 + -1.4
4,902,967 - -0.9
4,902,967 - -2.6
4,902,967 - +1.2
4,902,967 - -0.8
4,902,967 - -1.2
4,902,967 - +0.0
4,902,969 + -0.2
4,902,970 - -0.2
4,902,977 + -0.8
4,902,977 + -0.1
4,902,978 - +0.4
4,902,978 - +0.8

Or see this region's nucleotide sequence