Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20255

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20250 and AO353_20255 are separated by 219 nucleotidesAO353_20255 and AO353_20260 are separated by 136 nucleotides AO353_20250: AO353_20250 - hypothetical protein, at 4,452,110 to 4,453,480 _20250 AO353_20255: AO353_20255 - transcriptional regulator, at 4,453,700 to 4,454,404 _20255 AO353_20260: AO353_20260 - protein kinase, at 4,454,541 to 4,455,866 _20260 Position (kb) 4453 4454 4455Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4452.741 kb on + strand, within AO353_20250at 4452.741 kb on + strand, within AO353_20250at 4452.742 kb on - strand, within AO353_20250at 4452.742 kb on - strand, within AO353_20250at 4452.981 kb on + strand, within AO353_20250at 4453.038 kb on + strand, within AO353_20250at 4453.039 kb on - strand, within AO353_20250at 4453.093 kb on - strand, within AO353_20250at 4453.163 kb on + strand, within AO353_20250at 4453.192 kb on + strand, within AO353_20250at 4453.192 kb on + strand, within AO353_20250at 4453.192 kb on + strand, within AO353_20250at 4453.193 kb on - strand, within AO353_20250at 4453.193 kb on - strand, within AO353_20250at 4453.193 kb on - strand, within AO353_20250at 4453.193 kb on - strand, within AO353_20250at 4453.193 kb on - strand, within AO353_20250at 4453.221 kb on + strand, within AO353_20250at 4453.245 kb on + strand, within AO353_20250at 4453.246 kb on - strand, within AO353_20250at 4453.325 kb on + strand, within AO353_20250at 4453.325 kb on + strand, within AO353_20250at 4453.325 kb on + strand, within AO353_20250at 4453.325 kb on + strand, within AO353_20250at 4453.326 kb on - strandat 4453.503 kb on + strandat 4453.503 kb on + strandat 4453.503 kb on + strandat 4453.539 kb on + strandat 4453.539 kb on + strandat 4453.539 kb on + strandat 4453.539 kb on + strandat 4453.548 kb on + strandat 4453.549 kb on - strandat 4453.573 kb on - strandat 4453.573 kb on - strandat 4453.573 kb on - strandat 4453.637 kb on + strandat 4453.637 kb on + strandat 4453.638 kb on - strandat 4453.639 kb on + strandat 4453.639 kb on + strandat 4453.639 kb on + strandat 4453.639 kb on + strandat 4453.640 kb on - strandat 4453.664 kb on + strandat 4453.664 kb on + strandat 4453.664 kb on + strandat 4453.664 kb on + strandat 4453.664 kb on + strandat 4453.665 kb on - strandat 4453.665 kb on - strandat 4453.665 kb on - strandat 4453.665 kb on - strandat 4453.665 kb on - strandat 4453.665 kb on - strandat 4453.698 kb on + strandat 4453.931 kb on + strand, within AO353_20255at 4453.932 kb on - strand, within AO353_20255at 4453.932 kb on - strand, within AO353_20255at 4453.946 kb on + strand, within AO353_20255at 4453.946 kb on + strand, within AO353_20255at 4453.946 kb on + strand, within AO353_20255at 4453.947 kb on - strand, within AO353_20255at 4454.282 kb on + strand, within AO353_20255at 4454.283 kb on - strand, within AO353_20255at 4454.283 kb on - strand, within AO353_20255at 4454.490 kb on - strandat 4454.556 kb on - strandat 4454.556 kb on - strandat 4454.556 kb on - strandat 4454.825 kb on + strand, within AO353_20260at 4454.825 kb on + strand, within AO353_20260at 4454.825 kb on + strand, within AO353_20260at 4454.825 kb on + strand, within AO353_20260at 4454.825 kb on + strand, within AO353_20260at 4454.825 kb on + strand, within AO353_20260at 4454.825 kb on + strand, within AO353_20260at 4454.825 kb on + strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.826 kb on - strand, within AO353_20260at 4454.836 kb on + strand, within AO353_20260at 4454.836 kb on + strand, within AO353_20260at 4454.836 kb on + strand, within AO353_20260at 4454.944 kb on + strand, within AO353_20260at 4454.945 kb on - strand, within AO353_20260at 4454.945 kb on - strand, within AO353_20260at 4454.945 kb on - strand, within AO353_20260at 4455.086 kb on + strand, within AO353_20260at 4455.086 kb on + strand, within AO353_20260at 4455.086 kb on + strand, within AO353_20260at 4455.086 kb on + strand, within AO353_20260at 4455.086 kb on + strand, within AO353_20260at 4455.087 kb on - strand, within AO353_20260at 4455.087 kb on - strand, within AO353_20260at 4455.087 kb on - strand, within AO353_20260at 4455.087 kb on - strand, within AO353_20260at 4455.087 kb on - strand, within AO353_20260at 4455.149 kb on + strand, within AO353_20260at 4455.149 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.151 kb on + strand, within AO353_20260at 4455.152 kb on - strand, within AO353_20260at 4455.152 kb on - strand, within AO353_20260at 4455.152 kb on - strand, within AO353_20260at 4455.152 kb on - strand, within AO353_20260at 4455.152 kb on - strand, within AO353_20260at 4455.152 kb on - strand, within AO353_20260at 4455.152 kb on - strand, within AO353_20260at 4455.152 kb on - strand, within AO353_20260at 4455.329 kb on - strand, within AO353_20260

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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4,452,741 + AO353_20250 0.46 +0.9
4,452,741 + AO353_20250 0.46 +1.3
4,452,742 - AO353_20250 0.46 +0.9
4,452,742 - AO353_20250 0.46 -0.1
4,452,981 + AO353_20250 0.64 +0.5
4,453,038 + AO353_20250 0.68 -0.4
4,453,039 - AO353_20250 0.68 +0.9
4,453,093 - AO353_20250 0.72 -1.0
4,453,163 + AO353_20250 0.77 +0.5
4,453,192 + AO353_20250 0.79 +0.6
4,453,192 + AO353_20250 0.79 +0.5
4,453,192 + AO353_20250 0.79 +0.1
4,453,193 - AO353_20250 0.79 +0.5
4,453,193 - AO353_20250 0.79 +1.9
4,453,193 - AO353_20250 0.79 -0.8
4,453,193 - AO353_20250 0.79 +1.3
4,453,193 - AO353_20250 0.79 +0.2
4,453,221 + AO353_20250 0.81 +1.9
4,453,245 + AO353_20250 0.83 +0.9
4,453,246 - AO353_20250 0.83 +0.2
4,453,325 + AO353_20250 0.89 +1.2
4,453,325 + AO353_20250 0.89 -0.1
4,453,325 + AO353_20250 0.89 -0.5
4,453,325 + AO353_20250 0.89 +1.5
4,453,326 - -1.1
4,453,503 + +0.7
4,453,503 + -1.1
4,453,503 + -0.1
4,453,539 + +0.9
4,453,539 + +0.3
4,453,539 + +0.9
4,453,539 + +0.9
4,453,548 + +0.1
4,453,549 - -1.4
4,453,573 - +1.5
4,453,573 - +0.4
4,453,573 - -0.1
4,453,637 + -0.7
4,453,637 + -1.5
4,453,638 - +2.5
4,453,639 + -0.4
4,453,639 + -0.9
4,453,639 + -1.1
4,453,639 + -0.5
4,453,640 - +0.6
4,453,664 + -0.4
4,453,664 + +0.6
4,453,664 + +0.1
4,453,664 + -1.7
4,453,664 + -0.1
4,453,665 - -0.1
4,453,665 - -2.4
4,453,665 - -0.1
4,453,665 - -1.1
4,453,665 - +2.0
4,453,665 - +0.9
4,453,698 + +1.9
4,453,931 + AO353_20255 0.33 -1.0
4,453,932 - AO353_20255 0.33 +2.0
4,453,932 - AO353_20255 0.33 +0.9
4,453,946 + AO353_20255 0.35 -0.1
4,453,946 + AO353_20255 0.35 +1.1
4,453,946 + AO353_20255 0.35 -2.7
4,453,947 - AO353_20255 0.35 +1.5
4,454,282 + AO353_20255 0.83 +1.5
4,454,283 - AO353_20255 0.83 +1.1
4,454,283 - AO353_20255 0.83 +1.9
4,454,490 - -1.1
4,454,556 - +0.5
4,454,556 - -1.1
4,454,556 - +0.6
4,454,825 + AO353_20260 0.21 +1.5
4,454,825 + AO353_20260 0.21 +1.5
4,454,825 + AO353_20260 0.21 -0.1
4,454,825 + AO353_20260 0.21 -0.4
4,454,825 + AO353_20260 0.21 +2.5
4,454,825 + AO353_20260 0.21 +0.9
4,454,825 + AO353_20260 0.21 +0.1
4,454,825 + AO353_20260 0.21 -1.4
4,454,826 - AO353_20260 0.21 -1.3
4,454,826 - AO353_20260 0.21 +1.1
4,454,826 - AO353_20260 0.21 -0.5
4,454,826 - AO353_20260 0.21 +0.8
4,454,826 - AO353_20260 0.21 +0.0
4,454,826 - AO353_20260 0.21 +1.7
4,454,826 - AO353_20260 0.21 +1.6
4,454,826 - AO353_20260 0.21 +0.5
4,454,826 - AO353_20260 0.21 +1.2
4,454,826 - AO353_20260 0.21 +0.3
4,454,826 - AO353_20260 0.21 -0.7
4,454,826 - AO353_20260 0.21 +1.9
4,454,836 + AO353_20260 0.22 +0.9
4,454,836 + AO353_20260 0.22 +2.7
4,454,836 + AO353_20260 0.22 +0.2
4,454,944 + AO353_20260 0.30 +0.6
4,454,945 - AO353_20260 0.30 -1.1
4,454,945 - AO353_20260 0.30 +1.5
4,454,945 - AO353_20260 0.30 -0.1
4,455,086 + AO353_20260 0.41 +0.9
4,455,086 + AO353_20260 0.41 +0.4
4,455,086 + AO353_20260 0.41 +1.5
4,455,086 + AO353_20260 0.41 +0.3
4,455,086 + AO353_20260 0.41 -2.7
4,455,087 - AO353_20260 0.41 +1.3
4,455,087 - AO353_20260 0.41 +1.3
4,455,087 - AO353_20260 0.41 -0.6
4,455,087 - AO353_20260 0.41 +0.5
4,455,087 - AO353_20260 0.41 -0.5
4,455,149 + AO353_20260 0.46 -0.1
4,455,149 + AO353_20260 0.46 +0.9
4,455,151 + AO353_20260 0.46 +1.2
4,455,151 + AO353_20260 0.46 +1.6
4,455,151 + AO353_20260 0.46 +3.3
4,455,151 + AO353_20260 0.46 -0.1
4,455,151 + AO353_20260 0.46 -0.1
4,455,151 + AO353_20260 0.46 +1.5
4,455,151 + AO353_20260 0.46 +1.3
4,455,151 + AO353_20260 0.46 +0.5
4,455,151 + AO353_20260 0.46 +0.4
4,455,151 + AO353_20260 0.46 +0.9
4,455,151 + AO353_20260 0.46 +0.9
4,455,152 - AO353_20260 0.46 -0.1
4,455,152 - AO353_20260 0.46 +0.3
4,455,152 - AO353_20260 0.46 -0.1
4,455,152 - AO353_20260 0.46 +3.7
4,455,152 - AO353_20260 0.46 +1.9
4,455,152 - AO353_20260 0.46 -0.1
4,455,152 - AO353_20260 0.46 +0.3
4,455,152 - AO353_20260 0.46 -0.5
4,455,329 - AO353_20260 0.59 -0.8

Or see this region's nucleotide sequence