Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16305

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16295 and AO353_16300 overlap by 4 nucleotidesAO353_16300 and AO353_16305 are separated by 156 nucleotidesAO353_16305 and AO353_16310 are separated by 194 nucleotides AO353_16295: AO353_16295 - alpha/beta hydrolase, at 3,618,043 to 3,618,957 _16295 AO353_16300: AO353_16300 - hypothetical protein, at 3,618,954 to 3,619,280 _16300 AO353_16305: AO353_16305 - pilin assembly protein, at 3,619,437 to 3,619,781 _16305 AO353_16310: AO353_16310 - phosphoenolpyruvate carboxylase, at 3,619,976 to 3,622,606 _16310 Position (kb) 3619 3620Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3618.496 kb on + strand, within AO353_16295at 3618.497 kb on - strand, within AO353_16295at 3618.497 kb on - strand, within AO353_16295at 3618.664 kb on + strand, within AO353_16295at 3618.665 kb on - strand, within AO353_16295at 3618.665 kb on - strand, within AO353_16295at 3618.665 kb on - strand, within AO353_16295at 3618.665 kb on - strand, within AO353_16295at 3618.665 kb on - strand, within AO353_16295at 3618.665 kb on - strand, within AO353_16295at 3618.665 kb on - strand, within AO353_16295at 3618.665 kb on - strand, within AO353_16295at 3618.754 kb on + strand, within AO353_16295at 3618.754 kb on + strand, within AO353_16295at 3618.754 kb on + strand, within AO353_16295at 3618.755 kb on - strand, within AO353_16295at 3618.969 kb on - strandat 3619.035 kb on + strand, within AO353_16300at 3619.035 kb on + strand, within AO353_16300at 3619.119 kb on + strand, within AO353_16300at 3619.119 kb on + strand, within AO353_16300at 3619.119 kb on + strand, within AO353_16300at 3619.119 kb on + strand, within AO353_16300at 3619.120 kb on - strand, within AO353_16300at 3619.120 kb on - strand, within AO353_16300at 3619.120 kb on - strand, within AO353_16300at 3619.120 kb on - strand, within AO353_16300at 3619.172 kb on - strand, within AO353_16300at 3619.278 kb on + strandat 3619.278 kb on + strandat 3619.278 kb on + strandat 3619.278 kb on + strandat 3619.278 kb on + strandat 3619.279 kb on - strandat 3619.279 kb on - strandat 3619.279 kb on - strandat 3619.369 kb on + strandat 3619.369 kb on + strandat 3619.370 kb on - strandat 3619.370 kb on - strandat 3619.370 kb on - strandat 3619.370 kb on - strandat 3619.389 kb on - strandat 3619.467 kb on + strandat 3619.529 kb on - strand, within AO353_16305at 3619.579 kb on + strand, within AO353_16305at 3619.579 kb on + strand, within AO353_16305at 3619.579 kb on + strand, within AO353_16305at 3619.579 kb on + strand, within AO353_16305at 3619.579 kb on + strand, within AO353_16305at 3619.579 kb on + strand, within AO353_16305at 3619.580 kb on - strand, within AO353_16305at 3619.580 kb on - strand, within AO353_16305at 3619.580 kb on - strand, within AO353_16305at 3619.580 kb on - strand, within AO353_16305at 3619.580 kb on - strand, within AO353_16305at 3619.580 kb on - strand, within AO353_16305at 3619.580 kb on - strand, within AO353_16305at 3619.657 kb on + strand, within AO353_16305at 3619.657 kb on + strand, within AO353_16305at 3619.657 kb on + strand, within AO353_16305at 3619.657 kb on + strand, within AO353_16305at 3619.657 kb on + strand, within AO353_16305at 3619.657 kb on + strand, within AO353_16305at 3619.658 kb on - strand, within AO353_16305at 3619.658 kb on - strand, within AO353_16305at 3619.658 kb on - strand, within AO353_16305at 3619.658 kb on - strand, within AO353_16305at 3619.658 kb on - strand, within AO353_16305at 3619.715 kb on - strand, within AO353_16305at 3619.765 kb on - strandat 3619.782 kb on - strandat 3619.793 kb on + strandat 3619.794 kb on - strandat 3619.853 kb on + strandat 3619.853 kb on + strandat 3619.854 kb on - strandat 3619.860 kb on + strandat 3619.860 kb on + strandat 3619.861 kb on - strandat 3619.861 kb on - strandat 3619.861 kb on - strandat 3619.872 kb on + strandat 3619.873 kb on - strandat 3619.873 kb on - strandat 3619.892 kb on + strandat 3619.892 kb on + strandat 3619.917 kb on + strandat 3619.917 kb on + strandat 3619.917 kb on + strandat 3619.917 kb on + strandat 3619.917 kb on + strandat 3619.917 kb on + strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3619.918 kb on - strandat 3620.054 kb on + strandat 3620.232 kb on - strandat 3620.232 kb on - strandat 3620.426 kb on + strand, within AO353_16310at 3620.426 kb on + strand, within AO353_16310at 3620.427 kb on - strand, within AO353_16310at 3620.427 kb on - strand, within AO353_16310at 3620.427 kb on - strand, within AO353_16310at 3620.633 kb on + strand, within AO353_16310at 3620.633 kb on + strand, within AO353_16310at 3620.633 kb on + strand, within AO353_16310at 3620.634 kb on - strand, within AO353_16310at 3620.634 kb on - strand, within AO353_16310at 3620.634 kb on - strand, within AO353_16310at 3620.634 kb on - strand, within AO353_16310at 3620.634 kb on - strand, within AO353_16310at 3620.634 kb on - strand, within AO353_16310at 3620.634 kb on - strand, within AO353_16310

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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3,618,496 + AO353_16295 0.50 -0.5
3,618,497 - AO353_16295 0.50 +2.1
3,618,497 - AO353_16295 0.50 -1.5
3,618,664 + AO353_16295 0.68 +1.5
3,618,665 - AO353_16295 0.68 +0.6
3,618,665 - AO353_16295 0.68 +0.1
3,618,665 - AO353_16295 0.68 -0.4
3,618,665 - AO353_16295 0.68 -0.5
3,618,665 - AO353_16295 0.68 +0.8
3,618,665 - AO353_16295 0.68 +0.1
3,618,665 - AO353_16295 0.68 +1.6
3,618,665 - AO353_16295 0.68 +0.1
3,618,754 + AO353_16295 0.78 +2.1
3,618,754 + AO353_16295 0.78 -0.9
3,618,754 + AO353_16295 0.78 +2.4
3,618,755 - AO353_16295 0.78 -0.5
3,618,969 - +1.4
3,619,035 + AO353_16300 0.25 -0.9
3,619,035 + AO353_16300 0.25 +2.6
3,619,119 + AO353_16300 0.50 -0.2
3,619,119 + AO353_16300 0.50 -0.6
3,619,119 + AO353_16300 0.50 +0.5
3,619,119 + AO353_16300 0.50 -0.9
3,619,120 - AO353_16300 0.51 +1.9
3,619,120 - AO353_16300 0.51 -0.4
3,619,120 - AO353_16300 0.51 -2.3
3,619,120 - AO353_16300 0.51 -1.1
3,619,172 - AO353_16300 0.67 +1.0
3,619,278 + -1.4
3,619,278 + -0.3
3,619,278 + +3.4
3,619,278 + +2.6
3,619,278 + +0.3
3,619,279 - -0.2
3,619,279 - +0.1
3,619,279 - -0.6
3,619,369 + -0.5
3,619,369 + -0.9
3,619,370 - +1.3
3,619,370 - -0.4
3,619,370 - -1.5
3,619,370 - +0.1
3,619,389 - -2.3
3,619,467 + +1.3
3,619,529 - AO353_16305 0.27 -0.4
3,619,579 + AO353_16305 0.41 +1.1
3,619,579 + AO353_16305 0.41 +1.9
3,619,579 + AO353_16305 0.41 -0.9
3,619,579 + AO353_16305 0.41 +0.6
3,619,579 + AO353_16305 0.41 +2.4
3,619,579 + AO353_16305 0.41 +2.4
3,619,580 - AO353_16305 0.41 -2.3
3,619,580 - AO353_16305 0.41 +2.4
3,619,580 - AO353_16305 0.41 +1.1
3,619,580 - AO353_16305 0.41 +0.6
3,619,580 - AO353_16305 0.41 +0.9
3,619,580 - AO353_16305 0.41 +2.1
3,619,580 - AO353_16305 0.41 -0.9
3,619,657 + AO353_16305 0.64 +1.1
3,619,657 + AO353_16305 0.64 +3.6
3,619,657 + AO353_16305 0.64 +0.8
3,619,657 + AO353_16305 0.64 -1.5
3,619,657 + AO353_16305 0.64 +1.4
3,619,657 + AO353_16305 0.64 +1.1
3,619,658 - AO353_16305 0.64 -0.9
3,619,658 - AO353_16305 0.64 -0.9
3,619,658 - AO353_16305 0.64 +0.6
3,619,658 - AO353_16305 0.64 +1.6
3,619,658 - AO353_16305 0.64 +2.9
3,619,715 - AO353_16305 0.81 +1.6
3,619,765 - -0.3
3,619,782 - +0.4
3,619,793 + -0.4
3,619,794 - -0.3
3,619,853 + +1.1
3,619,853 + +0.6
3,619,854 - +0.6
3,619,860 + -0.7
3,619,860 + +0.6
3,619,861 - -0.2
3,619,861 - +1.1
3,619,861 - +0.1
3,619,872 + +1.6
3,619,873 - +1.8
3,619,873 - +0.6
3,619,892 + -0.7
3,619,892 + -0.5
3,619,917 + +0.5
3,619,917 + +1.1
3,619,917 + -1.3
3,619,917 + -0.4
3,619,917 + -0.4
3,619,917 + -1.9
3,619,918 - +0.1
3,619,918 - -1.9
3,619,918 - +0.1
3,619,918 - +0.6
3,619,918 - -0.1
3,619,918 - +3.2
3,619,918 - +0.5
3,619,918 - +1.5
3,619,918 - +2.6
3,619,918 - -0.9
3,619,918 - +1.2
3,620,054 + +1.6
3,620,232 - +0.3
3,620,232 - +0.1
3,620,426 + AO353_16310 0.17 -1.5
3,620,426 + AO353_16310 0.17 +0.8
3,620,427 - AO353_16310 0.17 +0.1
3,620,427 - AO353_16310 0.17 +0.6
3,620,427 - AO353_16310 0.17 +0.7
3,620,633 + AO353_16310 0.25 +0.1
3,620,633 + AO353_16310 0.25 -0.3
3,620,633 + AO353_16310 0.25 +1.1
3,620,634 - AO353_16310 0.25 +0.1
3,620,634 - AO353_16310 0.25 +1.5
3,620,634 - AO353_16310 0.25 +2.4
3,620,634 - AO353_16310 0.25 -0.4
3,620,634 - AO353_16310 0.25 +0.3
3,620,634 - AO353_16310 0.25 +0.1
3,620,634 - AO353_16310 0.25 +1.1

Or see this region's nucleotide sequence