Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15050

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15045 and AO353_15050 are separated by 9 nucleotidesAO353_15050 and AO353_15055 overlap by 13 nucleotides AO353_15045: AO353_15045 - taurine ABC transporter substrate-binding protein, at 3,330,181 to 3,331,167 _15045 AO353_15050: AO353_15050 - nitrate transport permease nrtB, at 3,331,177 to 3,331,980 _15050 AO353_15055: AO353_15055 - sulfonate ABC transporter ATP-binding protein, at 3,331,968 to 3,332,804 _15055 Position (kb) 3331 3332Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3330.313 kb on + strand, within AO353_15045at 3330.314 kb on - strand, within AO353_15045at 3330.314 kb on - strand, within AO353_15045at 3330.334 kb on + strand, within AO353_15045at 3330.335 kb on - strand, within AO353_15045at 3330.374 kb on + strand, within AO353_15045at 3330.375 kb on - strand, within AO353_15045at 3330.375 kb on - strand, within AO353_15045at 3330.391 kb on + strand, within AO353_15045at 3330.391 kb on + strand, within AO353_15045at 3330.391 kb on + strand, within AO353_15045at 3330.391 kb on + strand, within AO353_15045at 3330.391 kb on + strand, within AO353_15045at 3330.391 kb on + strand, within AO353_15045at 3330.391 kb on + strand, within AO353_15045at 3330.391 kb on + strand, within AO353_15045at 3330.391 kb on + strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.392 kb on - strand, within AO353_15045at 3330.613 kb on + strand, within AO353_15045at 3330.613 kb on + strand, within AO353_15045at 3330.614 kb on - strand, within AO353_15045at 3330.614 kb on - strand, within AO353_15045at 3330.614 kb on - strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.880 kb on + strand, within AO353_15045at 3330.881 kb on - strand, within AO353_15045at 3330.881 kb on - strand, within AO353_15045at 3330.895 kb on + strand, within AO353_15045at 3330.896 kb on - strand, within AO353_15045at 3330.896 kb on - strand, within AO353_15045at 3330.896 kb on - strand, within AO353_15045at 3330.896 kb on - strand, within AO353_15045at 3330.896 kb on - strandat 3330.922 kb on + strand, within AO353_15045at 3330.922 kb on + strand, within AO353_15045at 3330.922 kb on + strand, within AO353_15045at 3330.923 kb on - strand, within AO353_15045at 3331.003 kb on + strand, within AO353_15045at 3331.003 kb on + strand, within AO353_15045at 3331.003 kb on + strand, within AO353_15045at 3331.003 kb on + strand, within AO353_15045at 3331.003 kb on + strand, within AO353_15045at 3331.003 kb on + strand, within AO353_15045at 3331.004 kb on - strand, within AO353_15045at 3331.004 kb on - strand, within AO353_15045at 3331.114 kb on + strandat 3331.114 kb on + strandat 3331.114 kb on + strandat 3331.114 kb on + strandat 3331.114 kb on + strandat 3331.114 kb on + strandat 3331.114 kb on + strandat 3331.114 kb on + strandat 3331.165 kb on + strandat 3331.165 kb on + strandat 3331.165 kb on + strandat 3331.165 kb on + strandat 3331.166 kb on - strandat 3331.166 kb on - strandat 3331.166 kb on - strandat 3331.690 kb on + strand, within AO353_15050at 3331.690 kb on + strand, within AO353_15050at 3331.690 kb on + strand, within AO353_15050at 3331.690 kb on + strand, within AO353_15050at 3331.691 kb on - strand, within AO353_15050at 3331.691 kb on - strand, within AO353_15050at 3331.691 kb on - strand, within AO353_15050at 3331.798 kb on + strand, within AO353_15050at 3331.798 kb on + strand, within AO353_15050at 3331.799 kb on - strand, within AO353_15050at 3331.799 kb on - strand, within AO353_15050at 3331.978 kb on + strandat 3331.979 kb on - strandat 3332.094 kb on - strand, within AO353_15055at 3332.184 kb on + strand, within AO353_15055at 3332.185 kb on - strand, within AO353_15055at 3332.185 kb on - strand, within AO353_15055at 3332.185 kb on - strand, within AO353_15055at 3332.226 kb on + strand, within AO353_15055at 3332.226 kb on + strand, within AO353_15055at 3332.226 kb on + strand, within AO353_15055at 3332.226 kb on + strand, within AO353_15055at 3332.226 kb on + strand, within AO353_15055at 3332.227 kb on - strand, within AO353_15055at 3332.227 kb on - strand, within AO353_15055at 3332.227 kb on - strand, within AO353_15055at 3332.227 kb on - strand, within AO353_15055at 3332.227 kb on - strand, within AO353_15055at 3332.227 kb on - strand, within AO353_15055at 3332.227 kb on - strand, within AO353_15055at 3332.286 kb on + strand, within AO353_15055at 3332.286 kb on + strand, within AO353_15055at 3332.286 kb on + strand, within AO353_15055at 3332.287 kb on - strand, within AO353_15055at 3332.287 kb on - strand, within AO353_15055at 3332.287 kb on - strand, within AO353_15055at 3332.287 kb on - strand, within AO353_15055at 3332.287 kb on - strand, within AO353_15055at 3332.382 kb on + strand, within AO353_15055at 3332.382 kb on + strand, within AO353_15055at 3332.382 kb on + strand, within AO353_15055at 3332.382 kb on + strand, within AO353_15055at 3332.383 kb on - strand, within AO353_15055at 3332.383 kb on - strand, within AO353_15055at 3332.383 kb on - strand, within AO353_15055at 3332.383 kb on - strand, within AO353_15055at 3332.385 kb on + strand, within AO353_15055at 3332.385 kb on + strand, within AO353_15055at 3332.385 kb on + strand, within AO353_15055at 3332.385 kb on + strand, within AO353_15055at 3332.385 kb on + strand, within AO353_15055at 3332.385 kb on + strand, within AO353_15055at 3332.385 kb on + strand, within AO353_15055at 3332.385 kb on + strand, within AO353_15055at 3332.385 kb on + strand, within AO353_15055at 3332.386 kb on - strand, within AO353_15055at 3332.386 kb on - strand, within AO353_15055at 3332.386 kb on - strand, within AO353_15055at 3332.386 kb on - strand, within AO353_15055at 3332.386 kb on - strand, within AO353_15055at 3332.386 kb on - strand, within AO353_15055at 3332.386 kb on - strand, within AO353_15055at 3332.386 kb on - strand, within AO353_15055at 3332.386 kb on - strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.424 kb on + strand, within AO353_15055at 3332.425 kb on - strand, within AO353_15055at 3332.425 kb on - strand, within AO353_15055at 3332.425 kb on - strand, within AO353_15055at 3332.425 kb on - strand, within AO353_15055at 3332.425 kb on - strand, within AO353_15055at 3332.649 kb on + strand, within AO353_15055at 3332.649 kb on + strand, within AO353_15055at 3332.649 kb on + strand, within AO353_15055at 3332.649 kb on + strand, within AO353_15055at 3332.650 kb on - strand, within AO353_15055at 3332.650 kb on - strand, within AO353_15055at 3332.650 kb on - strand, within AO353_15055at 3332.650 kb on - strand, within AO353_15055at 3332.650 kb on - strand, within AO353_15055at 3332.650 kb on - strand, within AO353_15055at 3332.650 kb on - strand, within AO353_15055at 3332.650 kb on - strand, within AO353_15055

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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3,330,313 + AO353_15045 0.13 -0.5
3,330,314 - AO353_15045 0.13 +0.3
3,330,314 - AO353_15045 0.13 +0.1
3,330,334 + AO353_15045 0.16 -0.3
3,330,335 - AO353_15045 0.16 +0.6
3,330,374 + AO353_15045 0.20 +1.4
3,330,375 - AO353_15045 0.20 -2.1
3,330,375 - AO353_15045 0.20 +0.7
3,330,391 + AO353_15045 0.21 -0.1
3,330,391 + AO353_15045 0.21 -1.9
3,330,391 + AO353_15045 0.21 -0.3
3,330,391 + AO353_15045 0.21 -1.5
3,330,391 + AO353_15045 0.21 +0.1
3,330,391 + AO353_15045 0.21 -0.0
3,330,391 + AO353_15045 0.21 +0.8
3,330,391 + AO353_15045 0.21 +1.4
3,330,391 + AO353_15045 0.21 -0.9
3,330,392 - AO353_15045 0.21 +1.0
3,330,392 - AO353_15045 0.21 +0.3
3,330,392 - AO353_15045 0.21 +1.1
3,330,392 - AO353_15045 0.21 -0.5
3,330,392 - AO353_15045 0.21 -0.1
3,330,392 - AO353_15045 0.21 +3.1
3,330,392 - AO353_15045 0.21 +0.7
3,330,392 - AO353_15045 0.21 +0.9
3,330,392 - AO353_15045 0.21 -0.5
3,330,392 - AO353_15045 0.21 +2.8
3,330,392 - AO353_15045 0.21 -0.2
3,330,392 - AO353_15045 0.21 +0.1
3,330,392 - AO353_15045 0.21 -1.5
3,330,613 + AO353_15045 0.44 +1.9
3,330,613 + AO353_15045 0.44 +3.3
3,330,614 - AO353_15045 0.44 +0.1
3,330,614 - AO353_15045 0.44 +2.4
3,330,614 - AO353_15045 0.44 +0.1
3,330,880 + AO353_15045 0.71 -0.5
3,330,880 + AO353_15045 0.71 -0.9
3,330,880 + AO353_15045 0.71 +0.9
3,330,880 + AO353_15045 0.71 +0.7
3,330,880 + AO353_15045 0.71 +0.1
3,330,880 + AO353_15045 0.71 -0.9
3,330,880 + AO353_15045 0.71 +0.1
3,330,880 + AO353_15045 0.71 -0.9
3,330,880 + AO353_15045 0.71 +0.4
3,330,880 + AO353_15045 0.71 -0.6
3,330,881 - AO353_15045 0.71 -0.5
3,330,881 - AO353_15045 0.71 -0.9
3,330,895 + AO353_15045 0.72 +0.5
3,330,896 - AO353_15045 0.72 -0.9
3,330,896 - AO353_15045 0.72 +0.9
3,330,896 - AO353_15045 0.72 -1.5
3,330,896 - AO353_15045 0.72 +2.1
3,330,896 - +1.1
3,330,922 + AO353_15045 0.75 +0.1
3,330,922 + AO353_15045 0.75 +0.1
3,330,922 + AO353_15045 0.75 +0.1
3,330,923 - AO353_15045 0.75 +0.8
3,331,003 + AO353_15045 0.83 +2.0
3,331,003 + AO353_15045 0.83 +0.1
3,331,003 + AO353_15045 0.83 -0.9
3,331,003 + AO353_15045 0.83 -0.5
3,331,003 + AO353_15045 0.83 -1.5
3,331,003 + AO353_15045 0.83 +0.8
3,331,004 - AO353_15045 0.83 -1.9
3,331,004 - AO353_15045 0.83 +1.6
3,331,114 + +0.2
3,331,114 + -0.4
3,331,114 + -1.5
3,331,114 + -0.9
3,331,114 + +1.4
3,331,114 + +0.5
3,331,114 + -1.2
3,331,114 + -0.3
3,331,165 + -0.3
3,331,165 + -2.7
3,331,165 + +0.6
3,331,165 + +2.1
3,331,166 - -1.9
3,331,166 - +0.9
3,331,166 - -0.3
3,331,690 + AO353_15050 0.64 -1.2
3,331,690 + AO353_15050 0.64 -1.9
3,331,690 + AO353_15050 0.64 -0.6
3,331,690 + AO353_15050 0.64 -0.9
3,331,691 - AO353_15050 0.64 -0.5
3,331,691 - AO353_15050 0.64 -0.9
3,331,691 - AO353_15050 0.64 +0.8
3,331,798 + AO353_15050 0.77 -1.1
3,331,798 + AO353_15050 0.77 +1.7
3,331,799 - AO353_15050 0.77 -2.2
3,331,799 - AO353_15050 0.77 +1.0
3,331,978 + +0.6
3,331,979 - +1.1
3,332,094 - AO353_15055 0.15 +0.1
3,332,184 + AO353_15055 0.26 -0.3
3,332,185 - AO353_15055 0.26 -0.9
3,332,185 - AO353_15055 0.26 +0.1
3,332,185 - AO353_15055 0.26 +1.1
3,332,226 + AO353_15055 0.31 +0.5
3,332,226 + AO353_15055 0.31 +1.7
3,332,226 + AO353_15055 0.31 +0.1
3,332,226 + AO353_15055 0.31 +1.1
3,332,226 + AO353_15055 0.31 +1.8
3,332,227 - AO353_15055 0.31 -1.5
3,332,227 - AO353_15055 0.31 +2.4
3,332,227 - AO353_15055 0.31 -1.1
3,332,227 - AO353_15055 0.31 +1.3
3,332,227 - AO353_15055 0.31 +1.1
3,332,227 - AO353_15055 0.31 -0.9
3,332,227 - AO353_15055 0.31 -1.6
3,332,286 + AO353_15055 0.38 -0.2
3,332,286 + AO353_15055 0.38 +0.1
3,332,286 + AO353_15055 0.38 +0.7
3,332,287 - AO353_15055 0.38 -0.2
3,332,287 - AO353_15055 0.38 +1.0
3,332,287 - AO353_15055 0.38 -0.5
3,332,287 - AO353_15055 0.38 +0.1
3,332,287 - AO353_15055 0.38 +0.1
3,332,382 + AO353_15055 0.49 +1.4
3,332,382 + AO353_15055 0.49 -0.5
3,332,382 + AO353_15055 0.49 -0.3
3,332,382 + AO353_15055 0.49 +0.4
3,332,383 - AO353_15055 0.50 +0.3
3,332,383 - AO353_15055 0.50 +0.8
3,332,383 - AO353_15055 0.50 +0.8
3,332,383 - AO353_15055 0.50 +0.1
3,332,385 + AO353_15055 0.50 -0.1
3,332,385 + AO353_15055 0.50 -0.9
3,332,385 + AO353_15055 0.50 -0.5
3,332,385 + AO353_15055 0.50 +0.7
3,332,385 + AO353_15055 0.50 +0.7
3,332,385 + AO353_15055 0.50 -0.9
3,332,385 + AO353_15055 0.50 +1.5
3,332,385 + AO353_15055 0.50 -0.3
3,332,385 + AO353_15055 0.50 +1.1
3,332,386 - AO353_15055 0.50 +0.1
3,332,386 - AO353_15055 0.50 +1.7
3,332,386 - AO353_15055 0.50 +0.9
3,332,386 - AO353_15055 0.50 -0.2
3,332,386 - AO353_15055 0.50 +1.4
3,332,386 - AO353_15055 0.50 +1.5
3,332,386 - AO353_15055 0.50 +0.8
3,332,386 - AO353_15055 0.50 +1.1
3,332,386 - AO353_15055 0.50 -0.3
3,332,424 + AO353_15055 0.54 +0.7
3,332,424 + AO353_15055 0.54 +1.1
3,332,424 + AO353_15055 0.54 +1.9
3,332,424 + AO353_15055 0.54 -0.5
3,332,424 + AO353_15055 0.54 +0.7
3,332,424 + AO353_15055 0.54 -0.1
3,332,424 + AO353_15055 0.54 -0.5
3,332,424 + AO353_15055 0.54 +1.1
3,332,424 + AO353_15055 0.54 +2.9
3,332,424 + AO353_15055 0.54 +1.4
3,332,424 + AO353_15055 0.54 -0.6
3,332,425 - AO353_15055 0.55 -0.7
3,332,425 - AO353_15055 0.55 +0.7
3,332,425 - AO353_15055 0.55 +1.3
3,332,425 - AO353_15055 0.55 +0.7
3,332,425 - AO353_15055 0.55 +1.4
3,332,649 + AO353_15055 0.81 +1.4
3,332,649 + AO353_15055 0.81 +1.8
3,332,649 + AO353_15055 0.81 +1.5
3,332,649 + AO353_15055 0.81 +0.4
3,332,650 - AO353_15055 0.81 +0.8
3,332,650 - AO353_15055 0.81 +1.4
3,332,650 - AO353_15055 0.81 +0.5
3,332,650 - AO353_15055 0.81 +1.1
3,332,650 - AO353_15055 0.81 +0.1
3,332,650 - AO353_15055 0.81 +0.6
3,332,650 - AO353_15055 0.81 -0.9
3,332,650 - AO353_15055 0.81 +2.1

Or see this region's nucleotide sequence