Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13030

Experiment: Thallium(I) acetate 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_13020 and AO353_13025 are separated by 223 nucleotidesAO353_13025 and AO353_13030 overlap by 10 nucleotidesAO353_13030 and AO353_13035 are separated by 99 nucleotides AO353_13020: AO353_13020 - hypothetical protein, at 2,884,372 to 2,885,118 _13020 AO353_13025: AO353_13025 - ADP-ribose pyrophosphatase, at 2,885,342 to 2,885,959 _13025 AO353_13030: AO353_13030 - cytoplasmic protein, at 2,885,950 to 2,886,402 _13030 AO353_13035: AO353_13035 - serine/threonine protein phosphatase, at 2,886,502 to 2,887,317 _13035 Position (kb) 2885 2886 2887Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2885.026 kb on + strand, within AO353_13020at 2885.026 kb on + strand, within AO353_13020at 2885.026 kb on + strand, within AO353_13020at 2885.026 kb on + strand, within AO353_13020at 2885.026 kb on + strand, within AO353_13020at 2885.027 kb on - strand, within AO353_13020at 2885.027 kb on - strand, within AO353_13020at 2885.085 kb on + strandat 2885.086 kb on - strandat 2885.192 kb on + strandat 2885.193 kb on - strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.197 kb on + strandat 2885.198 kb on - strandat 2885.198 kb on - strandat 2885.198 kb on - strandat 2885.198 kb on - strandat 2885.201 kb on + strandat 2885.201 kb on + strandat 2885.201 kb on + strandat 2885.202 kb on - strandat 2885.202 kb on - strandat 2885.202 kb on - strandat 2885.202 kb on - strandat 2885.211 kb on + strandat 2885.211 kb on + strandat 2885.211 kb on + strandat 2885.212 kb on - strandat 2885.212 kb on - strandat 2885.212 kb on - strandat 2885.212 kb on - strandat 2885.212 kb on - strandat 2885.237 kb on + strandat 2885.284 kb on - strandat 2885.327 kb on + strandat 2885.327 kb on + strandat 2885.327 kb on + strandat 2885.327 kb on + strandat 2885.327 kb on + strandat 2885.328 kb on - strandat 2885.328 kb on - strandat 2885.341 kb on + strandat 2885.341 kb on + strandat 2885.341 kb on + strandat 2885.341 kb on + strandat 2885.342 kb on - strandat 2885.342 kb on - strandat 2885.342 kb on - strandat 2885.376 kb on + strandat 2885.376 kb on + strandat 2885.376 kb on + strandat 2885.377 kb on - strandat 2885.386 kb on - strandat 2885.386 kb on - strandat 2885.386 kb on - strandat 2885.414 kb on + strand, within AO353_13025at 2885.414 kb on + strand, within AO353_13025at 2885.415 kb on - strand, within AO353_13025at 2885.522 kb on + strand, within AO353_13025at 2885.548 kb on - strand, within AO353_13025at 2885.548 kb on - strand, within AO353_13025at 2885.574 kb on + strand, within AO353_13025at 2885.574 kb on + strand, within AO353_13025at 2885.574 kb on + strand, within AO353_13025at 2885.574 kb on + strand, within AO353_13025at 2885.574 kb on + strand, within AO353_13025at 2885.574 kb on + strand, within AO353_13025at 2885.575 kb on - strand, within AO353_13025at 2885.590 kb on + strand, within AO353_13025at 2885.591 kb on - strand, within AO353_13025at 2885.688 kb on + strand, within AO353_13025at 2885.688 kb on + strand, within AO353_13025at 2885.688 kb on + strand, within AO353_13025at 2885.688 kb on + strand, within AO353_13025at 2885.688 kb on + strand, within AO353_13025at 2885.689 kb on - strand, within AO353_13025at 2885.689 kb on - strand, within AO353_13025at 2885.689 kb on - strand, within AO353_13025at 2885.717 kb on + strand, within AO353_13025at 2885.717 kb on + strand, within AO353_13025at 2885.717 kb on + strand, within AO353_13025at 2885.717 kb on + strand, within AO353_13025at 2885.718 kb on - strand, within AO353_13025at 2885.718 kb on - strand, within AO353_13025at 2885.747 kb on + strand, within AO353_13025at 2885.747 kb on + strand, within AO353_13025at 2885.747 kb on + strand, within AO353_13025at 2885.747 kb on + strand, within AO353_13025at 2885.747 kb on + strand, within AO353_13025at 2885.748 kb on - strand, within AO353_13025at 2885.748 kb on - strand, within AO353_13025at 2885.759 kb on + strand, within AO353_13025at 2885.759 kb on + strand, within AO353_13025at 2885.759 kb on + strand, within AO353_13025at 2885.760 kb on - strand, within AO353_13025at 2885.760 kb on - strand, within AO353_13025at 2885.760 kb on - strand, within AO353_13025at 2885.760 kb on - strandat 2885.760 kb on - strand, within AO353_13025at 2885.760 kb on - strand, within AO353_13025at 2885.824 kb on + strand, within AO353_13025at 2885.824 kb on + strand, within AO353_13025at 2885.825 kb on - strand, within AO353_13025at 2885.825 kb on - strand, within AO353_13025at 2885.825 kb on - strand, within AO353_13025at 2885.868 kb on + strand, within AO353_13025at 2885.868 kb on + strand, within AO353_13025at 2885.869 kb on - strand, within AO353_13025at 2885.869 kb on - strand, within AO353_13025at 2885.902 kb on + strandat 2885.902 kb on + strandat 2885.903 kb on - strandat 2885.903 kb on - strandat 2885.950 kb on - strandat 2885.950 kb on - strandat 2885.958 kb on - strandat 2885.958 kb on - strandat 2885.958 kb on - strandat 2886.022 kb on + strand, within AO353_13030at 2886.022 kb on + strand, within AO353_13030at 2886.022 kb on + strand, within AO353_13030at 2886.023 kb on - strand, within AO353_13030at 2886.023 kb on - strand, within AO353_13030at 2886.023 kb on - strand, within AO353_13030at 2886.023 kb on - strand, within AO353_13030at 2886.145 kb on + strand, within AO353_13030at 2886.145 kb on + strand, within AO353_13030at 2886.220 kb on + strand, within AO353_13030at 2886.220 kb on + strand, within AO353_13030at 2886.220 kb on + strand, within AO353_13030at 2886.220 kb on + strand, within AO353_13030at 2886.220 kb on + strand, within AO353_13030at 2886.221 kb on - strand, within AO353_13030at 2886.283 kb on + strand, within AO353_13030at 2886.283 kb on + strand, within AO353_13030at 2886.283 kb on + strand, within AO353_13030at 2886.283 kb on + strand, within AO353_13030at 2886.283 kb on + strandat 2886.283 kb on + strand, within AO353_13030at 2886.283 kb on + strand, within AO353_13030at 2886.283 kb on + strand, within AO353_13030at 2886.283 kb on + strand, within AO353_13030at 2886.283 kb on + strand, within AO353_13030at 2886.283 kb on + strand, within AO353_13030at 2886.284 kb on - strand, within AO353_13030at 2886.284 kb on - strand, within AO353_13030at 2886.284 kb on - strand, within AO353_13030at 2886.284 kb on - strand, within AO353_13030at 2886.284 kb on - strand, within AO353_13030at 2886.284 kb on - strand, within AO353_13030at 2886.284 kb on - strand, within AO353_13030at 2886.284 kb on - strand, within AO353_13030at 2886.284 kb on - strand, within AO353_13030at 2886.395 kb on + strandat 2886.395 kb on + strandat 2886.395 kb on + strandat 2886.395 kb on + strandat 2886.395 kb on + strandat 2886.395 kb on + strandat 2886.396 kb on - strandat 2886.396 kb on - strandat 2886.396 kb on - strandat 2886.396 kb on - strandat 2886.400 kb on + strandat 2886.400 kb on + strandat 2886.400 kb on + strandat 2886.400 kb on + strandat 2886.400 kb on + strandat 2886.401 kb on - strandat 2886.401 kb on - strandat 2886.401 kb on - strandat 2886.401 kb on - strandat 2886.401 kb on - strandat 2886.401 kb on - strandat 2886.401 kb on - strandat 2886.401 kb on - strandat 2886.401 kb on - strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.454 kb on + strandat 2886.455 kb on - strandat 2886.455 kb on - strandat 2886.455 kb on - strandat 2886.455 kb on - strandat 2886.455 kb on - strandat 2886.455 kb on - strandat 2886.455 kb on - strandat 2886.455 kb on - strandat 2886.466 kb on + strandat 2886.539 kb on + strandat 2887.376 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
remove
2,885,026 + AO353_13020 0.88 +1.2
2,885,026 + AO353_13020 0.88 -0.6
2,885,026 + AO353_13020 0.88 -1.8
2,885,026 + AO353_13020 0.88 -2.1
2,885,026 + AO353_13020 0.88 -2.2
2,885,027 - AO353_13020 0.88 +1.1
2,885,027 - AO353_13020 0.88 -0.2
2,885,085 + -0.3
2,885,086 - -0.6
2,885,192 + +0.2
2,885,193 - -0.8
2,885,197 + -0.8
2,885,197 + -1.8
2,885,197 + -1.3
2,885,197 + +0.2
2,885,197 + +1.1
2,885,197 + +1.7
2,885,197 + -1.0
2,885,197 + -0.0
2,885,197 + +1.2
2,885,197 + -0.6
2,885,197 + +0.8
2,885,198 - +1.2
2,885,198 - -1.3
2,885,198 - +0.2
2,885,198 - +0.1
2,885,201 + +2.8
2,885,201 + +0.2
2,885,201 + -1.3
2,885,202 - +0.6
2,885,202 - -0.0
2,885,202 - +0.7
2,885,202 - +1.0
2,885,211 + +0.5
2,885,211 + +0.2
2,885,211 + +0.2
2,885,212 - +0.2
2,885,212 - -0.1
2,885,212 - +0.9
2,885,212 - +0.8
2,885,212 - -1.1
2,885,237 + -2.6
2,885,284 - -1.1
2,885,327 + -0.3
2,885,327 + -0.8
2,885,327 + -0.0
2,885,327 + +0.2
2,885,327 + +0.2
2,885,328 - +1.7
2,885,328 - +0.6
2,885,341 + +0.2
2,885,341 + -0.2
2,885,341 + +0.2
2,885,341 + +0.2
2,885,342 - +1.2
2,885,342 - -0.3
2,885,342 - -0.8
2,885,376 + -0.0
2,885,376 + +0.7
2,885,376 + -0.8
2,885,377 - -0.5
2,885,386 - -0.1
2,885,386 - -1.8
2,885,386 - +1.6
2,885,414 + AO353_13025 0.12 -1.1
2,885,414 + AO353_13025 0.12 -0.0
2,885,415 - AO353_13025 0.12 +0.8
2,885,522 + AO353_13025 0.29 -0.6
2,885,548 - AO353_13025 0.33 -0.8
2,885,548 - AO353_13025 0.33 +1.4
2,885,574 + AO353_13025 0.38 +1.4
2,885,574 + AO353_13025 0.38 +0.8
2,885,574 + AO353_13025 0.38 -0.2
2,885,574 + AO353_13025 0.38 -0.3
2,885,574 + AO353_13025 0.38 -0.1
2,885,574 + AO353_13025 0.38 +1.0
2,885,575 - AO353_13025 0.38 +0.4
2,885,590 + AO353_13025 0.40 +1.8
2,885,591 - AO353_13025 0.40 -2.3
2,885,688 + AO353_13025 0.56 +0.2
2,885,688 + AO353_13025 0.56 +0.4
2,885,688 + AO353_13025 0.56 -1.3
2,885,688 + AO353_13025 0.56 -0.3
2,885,688 + AO353_13025 0.56 -0.8
2,885,689 - AO353_13025 0.56 +1.8
2,885,689 - AO353_13025 0.56 +1.2
2,885,689 - AO353_13025 0.56 +0.2
2,885,717 + AO353_13025 0.61 -1.1
2,885,717 + AO353_13025 0.61 +1.2
2,885,717 + AO353_13025 0.61 -1.3
2,885,717 + AO353_13025 0.61 +0.2
2,885,718 - AO353_13025 0.61 +0.2
2,885,718 - AO353_13025 0.61 +0.4
2,885,747 + AO353_13025 0.66 -0.8
2,885,747 + AO353_13025 0.66 -1.3
2,885,747 + AO353_13025 0.66 -0.0
2,885,747 + AO353_13025 0.66 +1.8
2,885,747 + AO353_13025 0.66 +0.2
2,885,748 - AO353_13025 0.66 -0.8
2,885,748 - AO353_13025 0.66 +1.4
2,885,759 + AO353_13025 0.67 +0.2
2,885,759 + AO353_13025 0.67 +0.2
2,885,759 + AO353_13025 0.67 -0.5
2,885,760 - AO353_13025 0.68 +0.1
2,885,760 - AO353_13025 0.68 +0.1
2,885,760 - AO353_13025 0.68 +1.1
2,885,760 - -0.8
2,885,760 - AO353_13025 0.68 -0.8
2,885,760 - AO353_13025 0.68 +0.2
2,885,824 + AO353_13025 0.78 -1.8
2,885,824 + AO353_13025 0.78 +0.8
2,885,825 - AO353_13025 0.78 +1.2
2,885,825 - AO353_13025 0.78 +1.4
2,885,825 - AO353_13025 0.78 -0.3
2,885,868 + AO353_13025 0.85 +1.7
2,885,868 + AO353_13025 0.85 -0.3
2,885,869 - AO353_13025 0.85 -1.8
2,885,869 - AO353_13025 0.85 +0.8
2,885,902 + -1.3
2,885,902 + -1.3
2,885,903 - +1.5
2,885,903 - +0.2
2,885,950 - +1.0
2,885,950 - -0.5
2,885,958 - +0.8
2,885,958 - +0.8
2,885,958 - -0.8
2,886,022 + AO353_13030 0.16 +0.2
2,886,022 + AO353_13030 0.16 +0.8
2,886,022 + AO353_13030 0.16 +2.2
2,886,023 - AO353_13030 0.16 +0.7
2,886,023 - AO353_13030 0.16 -1.8
2,886,023 - AO353_13030 0.16 +1.2
2,886,023 - AO353_13030 0.16 +1.2
2,886,145 + AO353_13030 0.43 +0.8
2,886,145 + AO353_13030 0.43 +0.9
2,886,220 + AO353_13030 0.60 +1.8
2,886,220 + AO353_13030 0.60 +0.2
2,886,220 + AO353_13030 0.60 +0.8
2,886,220 + AO353_13030 0.60 +1.1
2,886,220 + AO353_13030 0.60 +1.8
2,886,221 - AO353_13030 0.60 +0.7
2,886,283 + AO353_13030 0.74 +0.9
2,886,283 + AO353_13030 0.74 +0.2
2,886,283 + AO353_13030 0.74 +1.4
2,886,283 + AO353_13030 0.74 +1.4
2,886,283 + +0.2
2,886,283 + AO353_13030 0.74 -0.0
2,886,283 + AO353_13030 0.74 +1.1
2,886,283 + AO353_13030 0.74 +1.8
2,886,283 + AO353_13030 0.74 +1.2
2,886,283 + AO353_13030 0.74 +0.7
2,886,283 + AO353_13030 0.74 +0.7
2,886,284 - AO353_13030 0.74 +1.0
2,886,284 - AO353_13030 0.74 -0.8
2,886,284 - AO353_13030 0.74 -0.5
2,886,284 - AO353_13030 0.74 +1.0
2,886,284 - AO353_13030 0.74 +0.2
2,886,284 - AO353_13030 0.74 +1.2
2,886,284 - AO353_13030 0.74 +2.2
2,886,284 - AO353_13030 0.74 +1.2
2,886,284 - AO353_13030 0.74 +2.1
2,886,395 + -1.3
2,886,395 + -0.3
2,886,395 + -0.8
2,886,395 + -1.3
2,886,395 + -1.0
2,886,395 + +1.2
2,886,396 - +0.2
2,886,396 - +0.2
2,886,396 - -1.0
2,886,396 - +1.2
2,886,400 + +0.4
2,886,400 + +0.2
2,886,400 + +0.8
2,886,400 + -0.4
2,886,400 + -0.2
2,886,401 - -1.8
2,886,401 - +0.2
2,886,401 - +0.6
2,886,401 - +2.2
2,886,401 - +0.2
2,886,401 - +0.2
2,886,401 - +0.2
2,886,401 - -0.2
2,886,401 - -0.2
2,886,454 + -0.1
2,886,454 + -1.1
2,886,454 + +0.2
2,886,454 + +0.8
2,886,454 + -0.8
2,886,454 + -1.3
2,886,454 + +0.2
2,886,454 + -0.8
2,886,454 + -1.5
2,886,454 + +0.0
2,886,454 + +1.2
2,886,454 + +1.6
2,886,454 + +1.0
2,886,454 + -0.4
2,886,455 - +1.8
2,886,455 - +1.1
2,886,455 - +0.7
2,886,455 - +0.8
2,886,455 - +1.2
2,886,455 - -1.3
2,886,455 - -2.3
2,886,455 - +1.0
2,886,466 + +1.2
2,886,539 + -0.1
2,887,376 + -0.2

Or see this region's nucleotide sequence