Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09830

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09820 and AO353_09825 are separated by 85 nucleotidesAO353_09825 and AO353_09830 are separated by 188 nucleotidesAO353_09830 and AO353_09835 are separated by 34 nucleotidesAO353_09835 and AO353_09840 are separated by 201 nucleotidesAO353_09840 and AO353_09845 overlap by 1 nucleotides AO353_09820: AO353_09820 - hypothetical protein, at 2,146,373 to 2,146,852 _09820 AO353_09825: AO353_09825 - integration host factor, at 2,146,938 to 2,147,213 _09825 AO353_09830: AO353_09830 - pyridine nucleotide-disulfide oxidoreductase, at 2,147,402 to 2,148,550 _09830 AO353_09835: AO353_09835 - rubredoxin, at 2,148,585 to 2,148,755 _09835 AO353_09840: AO353_09840 - chorismate--pyruvate lyase, at 2,148,957 to 2,149,520 _09840 AO353_09845: AO353_09845 - 4-hydroxybenzoate octaprenyltransferase, at 2,149,520 to 2,150,410 _09845 Position (kb) 2147 2148 2149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.402 kb on - strandat 2146.404 kb on + strandat 2146.404 kb on + strandat 2146.405 kb on - strandat 2146.405 kb on - strandat 2146.475 kb on - strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.497 kb on + strand, within AO353_09820at 2146.498 kb on - strandat 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.498 kb on - strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.508 kb on + strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.509 kb on - strand, within AO353_09820at 2146.689 kb on + strand, within AO353_09820at 2146.689 kb on + strand, within AO353_09820at 2146.690 kb on - strand, within AO353_09820at 2146.690 kb on - strand, within AO353_09820at 2146.694 kb on - strand, within AO353_09820at 2146.694 kb on - strand, within AO353_09820at 2146.703 kb on + strand, within AO353_09820at 2146.704 kb on - strand, within AO353_09820at 2146.704 kb on - strand, within AO353_09820at 2146.704 kb on - strand, within AO353_09820at 2146.704 kb on - strand, within AO353_09820at 2146.745 kb on + strand, within AO353_09820at 2146.746 kb on - strand, within AO353_09820at 2146.771 kb on + strand, within AO353_09820at 2146.771 kb on + strand, within AO353_09820at 2146.771 kb on + strand, within AO353_09820at 2146.772 kb on - strand, within AO353_09820at 2146.772 kb on - strand, within AO353_09820at 2146.790 kb on + strand, within AO353_09820at 2146.790 kb on + strand, within AO353_09820at 2146.791 kb on - strand, within AO353_09820at 2146.791 kb on - strand, within AO353_09820at 2146.791 kb on - strand, within AO353_09820at 2146.831 kb on - strandat 2146.831 kb on - strandat 2146.831 kb on - strandat 2146.851 kb on - strandat 2146.851 kb on - strandat 2146.932 kb on + strandat 2146.932 kb on + strandat 2146.932 kb on + strandat 2146.932 kb on + strandat 2146.933 kb on - strandat 2146.933 kb on - strandat 2147.069 kb on + strand, within AO353_09825at 2147.069 kb on + strand, within AO353_09825at 2147.099 kb on + strand, within AO353_09825at 2147.100 kb on - strand, within AO353_09825at 2147.207 kb on + strandat 2147.207 kb on + strandat 2147.208 kb on - strandat 2147.208 kb on - strandat 2147.208 kb on - strandat 2147.208 kb on - strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.245 kb on + strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.246 kb on - strandat 2147.293 kb on + strandat 2147.293 kb on + strandat 2147.294 kb on - strandat 2147.361 kb on + strandat 2147.361 kb on + strandat 2147.403 kb on + strandat 2147.404 kb on - strandat 2147.432 kb on + strandat 2147.433 kb on - strandat 2147.473 kb on - strandat 2147.622 kb on + strand, within AO353_09830at 2147.622 kb on + strand, within AO353_09830at 2147.694 kb on + strand, within AO353_09830at 2147.694 kb on + strand, within AO353_09830at 2147.694 kb on + strand, within AO353_09830at 2147.694 kb on + strand, within AO353_09830at 2147.694 kb on + strand, within AO353_09830at 2147.694 kb on + strand, within AO353_09830at 2147.694 kb on + strand, within AO353_09830at 2147.694 kb on + strand, within AO353_09830at 2147.695 kb on - strand, within AO353_09830at 2147.695 kb on - strand, within AO353_09830at 2147.695 kb on - strand, within AO353_09830at 2147.695 kb on - strand, within AO353_09830at 2147.739 kb on + strand, within AO353_09830at 2147.739 kb on + strand, within AO353_09830at 2147.739 kb on + strand, within AO353_09830at 2147.739 kb on + strand, within AO353_09830at 2147.739 kb on + strand, within AO353_09830at 2147.739 kb on + strand, within AO353_09830at 2147.739 kb on + strand, within AO353_09830at 2147.739 kb on + strand, within AO353_09830at 2147.740 kb on - strand, within AO353_09830at 2147.740 kb on - strand, within AO353_09830at 2147.740 kb on - strand, within AO353_09830at 2147.740 kb on - strand, within AO353_09830at 2147.740 kb on - strand, within AO353_09830at 2147.740 kb on - strand, within AO353_09830at 2147.740 kb on - strand, within AO353_09830at 2147.740 kb on - strand, within AO353_09830at 2147.743 kb on + strand, within AO353_09830at 2147.743 kb on + strand, within AO353_09830at 2147.743 kb on + strand, within AO353_09830at 2147.743 kb on + strand, within AO353_09830at 2147.743 kb on + strand, within AO353_09830at 2147.743 kb on + strand, within AO353_09830at 2147.743 kb on + strand, within AO353_09830at 2147.744 kb on - strand, within AO353_09830at 2147.744 kb on - strand, within AO353_09830at 2147.744 kb on - strand, within AO353_09830at 2147.744 kb on - strand, within AO353_09830at 2147.744 kb on - strand, within AO353_09830at 2147.744 kb on - strand, within AO353_09830at 2147.744 kb on - strand, within AO353_09830at 2147.923 kb on + strand, within AO353_09830at 2147.923 kb on + strand, within AO353_09830at 2147.923 kb on + strand, within AO353_09830at 2147.923 kb on + strand, within AO353_09830at 2147.923 kb on + strand, within AO353_09830at 2148.153 kb on + strand, within AO353_09830at 2148.153 kb on + strand, within AO353_09830at 2148.153 kb on + strand, within AO353_09830at 2148.317 kb on - strand, within AO353_09830at 2148.429 kb on + strand, within AO353_09830at 2148.429 kb on + strand, within AO353_09830at 2148.429 kb on + strand, within AO353_09830at 2148.430 kb on - strand, within AO353_09830at 2148.430 kb on - strand, within AO353_09830at 2148.430 kb on - strand, within AO353_09830at 2148.430 kb on - strand, within AO353_09830at 2148.507 kb on + strandat 2148.508 kb on - strandat 2148.508 kb on - strandat 2148.508 kb on - strandat 2148.508 kb on - strandat 2148.508 kb on - strandat 2148.508 kb on - strandat 2148.555 kb on + strandat 2148.556 kb on - strandat 2148.556 kb on - strandat 2148.556 kb on - strandat 2148.718 kb on + strand, within AO353_09835at 2148.718 kb on + strand, within AO353_09835at 2148.718 kb on + strand, within AO353_09835at 2148.718 kb on + strand, within AO353_09835at 2148.718 kb on + strand, within AO353_09835at 2148.718 kb on + strand, within AO353_09835at 2148.718 kb on + strand, within AO353_09835at 2148.719 kb on - strand, within AO353_09835at 2148.719 kb on - strand, within AO353_09835at 2148.719 kb on - strand, within AO353_09835at 2148.756 kb on + strandat 2148.756 kb on + strandat 2148.756 kb on + strandat 2148.757 kb on - strandat 2148.757 kb on - strandat 2148.785 kb on - strandat 2148.839 kb on + strandat 2148.881 kb on - strandat 2148.918 kb on + strandat 2148.919 kb on - strandat 2148.945 kb on + strandat 2149.203 kb on + strand, within AO353_09840at 2149.203 kb on + strand, within AO353_09840at 2149.203 kb on + strand, within AO353_09840at 2149.203 kb on + strand, within AO353_09840at 2149.203 kb on + strand, within AO353_09840at 2149.203 kb on + strand, within AO353_09840at 2149.203 kb on + strand, within AO353_09840at 2149.203 kb on + strand, within AO353_09840at 2149.203 kb on + strand, within AO353_09840at 2149.204 kb on - strand, within AO353_09840at 2149.204 kb on - strand, within AO353_09840at 2149.204 kb on - strand, within AO353_09840at 2149.204 kb on - strand, within AO353_09840at 2149.204 kb on - strand, within AO353_09840at 2149.204 kb on - strand, within AO353_09840at 2149.204 kb on - strand, within AO353_09840at 2149.204 kb on - strand, within AO353_09840at 2149.283 kb on + strand, within AO353_09840at 2149.284 kb on - strand, within AO353_09840at 2149.284 kb on - strand, within AO353_09840at 2149.368 kb on + strand, within AO353_09840at 2149.468 kb on + strandat 2149.468 kb on + strandat 2149.468 kb on + strandat 2149.468 kb on + strandat 2149.468 kb on + strandat 2149.469 kb on - strandat 2149.469 kb on - strandat 2149.523 kb on + strandat 2149.523 kb on + strandat 2149.523 kb on + strandat 2149.523 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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2,146,402 - -1.2
2,146,402 - +1.4
2,146,402 - +1.0
2,146,402 - -1.2
2,146,402 - -0.6
2,146,402 - +1.0
2,146,404 + -1.2
2,146,404 + +0.1
2,146,405 - +0.7
2,146,405 - +0.3
2,146,475 - AO353_09820 0.21 +0.4
2,146,497 + AO353_09820 0.26 -1.6
2,146,497 + AO353_09820 0.26 -0.9
2,146,497 + AO353_09820 0.26 +0.4
2,146,497 + AO353_09820 0.26 +0.2
2,146,497 + AO353_09820 0.26 +0.4
2,146,497 + AO353_09820 0.26 -0.2
2,146,497 + AO353_09820 0.26 +0.4
2,146,498 - +1.4
2,146,498 - AO353_09820 0.26 -1.4
2,146,498 - AO353_09820 0.26 +0.4
2,146,498 - AO353_09820 0.26 +1.2
2,146,498 - AO353_09820 0.26 +1.0
2,146,498 - AO353_09820 0.26 -0.6
2,146,498 - AO353_09820 0.26 +1.0
2,146,498 - AO353_09820 0.26 +0.1
2,146,508 + AO353_09820 0.28 -0.2
2,146,508 + AO353_09820 0.28 +1.7
2,146,508 + AO353_09820 0.28 +1.0
2,146,508 + AO353_09820 0.28 +1.9
2,146,508 + AO353_09820 0.28 -0.2
2,146,508 + AO353_09820 0.28 +0.4
2,146,509 - AO353_09820 0.28 +0.4
2,146,509 - AO353_09820 0.28 +0.4
2,146,509 - AO353_09820 0.28 +0.4
2,146,509 - AO353_09820 0.28 +1.4
2,146,509 - AO353_09820 0.28 +0.6
2,146,509 - AO353_09820 0.28 +1.4
2,146,509 - AO353_09820 0.28 +2.7
2,146,689 + AO353_09820 0.66 +0.1
2,146,689 + AO353_09820 0.66 -1.6
2,146,690 - AO353_09820 0.66 +2.7
2,146,690 - AO353_09820 0.66 +1.8
2,146,694 - AO353_09820 0.67 -0.9
2,146,694 - AO353_09820 0.67 -1.2
2,146,703 + AO353_09820 0.69 +0.1
2,146,704 - AO353_09820 0.69 -1.2
2,146,704 - AO353_09820 0.69 +1.4
2,146,704 - AO353_09820 0.69 +0.4
2,146,704 - AO353_09820 0.69 -0.8
2,146,745 + AO353_09820 0.78 +2.0
2,146,746 - AO353_09820 0.78 +2.0
2,146,771 + AO353_09820 0.83 +1.4
2,146,771 + AO353_09820 0.83 -0.5
2,146,771 + AO353_09820 0.83 -0.6
2,146,772 - AO353_09820 0.83 +0.7
2,146,772 - AO353_09820 0.83 -0.7
2,146,790 + AO353_09820 0.87 -0.2
2,146,790 + AO353_09820 0.87 -0.6
2,146,791 - AO353_09820 0.87 +1.8
2,146,791 - AO353_09820 0.87 +0.4
2,146,791 - AO353_09820 0.87 +1.6
2,146,831 - +0.4
2,146,831 - +0.6
2,146,831 - -1.6
2,146,851 - -1.6
2,146,851 - -1.6
2,146,932 + +0.6
2,146,932 + +1.0
2,146,932 + +1.6
2,146,932 + +1.7
2,146,933 - +1.2
2,146,933 - -0.8
2,147,069 + AO353_09825 0.47 +0.8
2,147,069 + AO353_09825 0.47 -1.2
2,147,099 + AO353_09825 0.58 -0.6
2,147,100 - AO353_09825 0.59 +2.0
2,147,207 + +0.7
2,147,207 + +0.4
2,147,208 - +1.1
2,147,208 - +0.3
2,147,208 - +0.4
2,147,208 - +1.4
2,147,245 + -0.6
2,147,245 + +2.4
2,147,245 + -0.6
2,147,245 + +1.1
2,147,245 + +0.0
2,147,245 + +2.0
2,147,245 + +1.4
2,147,245 + +1.8
2,147,245 + +0.4
2,147,245 + +1.1
2,147,245 + +0.4
2,147,245 + -0.4
2,147,246 - -0.8
2,147,246 - +1.6
2,147,246 - +0.7
2,147,246 - -1.2
2,147,246 - -0.1
2,147,246 - +0.7
2,147,246 - +0.1
2,147,246 - -0.3
2,147,246 - -1.2
2,147,246 - -1.2
2,147,246 - +1.1
2,147,246 - +2.4
2,147,293 + +1.0
2,147,293 + +0.4
2,147,294 - +1.0
2,147,361 + +0.2
2,147,361 + +1.4
2,147,403 + -0.6
2,147,404 - -0.4
2,147,432 + -1.9
2,147,433 - +0.4
2,147,473 - -1.9
2,147,622 + AO353_09830 0.19 -0.0
2,147,622 + AO353_09830 0.19 +1.6
2,147,694 + AO353_09830 0.25 +0.4
2,147,694 + AO353_09830 0.25 -0.2
2,147,694 + AO353_09830 0.25 +0.8
2,147,694 + AO353_09830 0.25 -0.6
2,147,694 + AO353_09830 0.25 -0.6
2,147,694 + AO353_09830 0.25 -3.3
2,147,694 + AO353_09830 0.25 -0.2
2,147,694 + AO353_09830 0.25 -0.8
2,147,695 - AO353_09830 0.26 +0.4
2,147,695 - AO353_09830 0.26 -1.6
2,147,695 - AO353_09830 0.26 -1.6
2,147,695 - AO353_09830 0.26 +0.4
2,147,739 + AO353_09830 0.29 +1.4
2,147,739 + AO353_09830 0.29 -0.6
2,147,739 + AO353_09830 0.29 +0.4
2,147,739 + AO353_09830 0.29 -1.8
2,147,739 + AO353_09830 0.29 -0.6
2,147,739 + AO353_09830 0.29 -0.4
2,147,739 + AO353_09830 0.29 -1.2
2,147,739 + AO353_09830 0.29 -0.2
2,147,740 - AO353_09830 0.29 -0.6
2,147,740 - AO353_09830 0.29 -0.9
2,147,740 - AO353_09830 0.29 +0.9
2,147,740 - AO353_09830 0.29 -0.6
2,147,740 - AO353_09830 0.29 +2.0
2,147,740 - AO353_09830 0.29 -1.2
2,147,740 - AO353_09830 0.29 -1.6
2,147,740 - AO353_09830 0.29 +0.6
2,147,743 + AO353_09830 0.30 -1.4
2,147,743 + AO353_09830 0.30 +0.7
2,147,743 + AO353_09830 0.30 -0.0
2,147,743 + AO353_09830 0.30 +0.4
2,147,743 + AO353_09830 0.30 +1.2
2,147,743 + AO353_09830 0.30 +1.4
2,147,743 + AO353_09830 0.30 -0.4
2,147,744 - AO353_09830 0.30 -1.8
2,147,744 - AO353_09830 0.30 -0.5
2,147,744 - AO353_09830 0.30 -0.3
2,147,744 - AO353_09830 0.30 -0.2
2,147,744 - AO353_09830 0.30 -0.6
2,147,744 - AO353_09830 0.30 -1.3
2,147,744 - AO353_09830 0.30 +0.4
2,147,923 + AO353_09830 0.45 -0.4
2,147,923 + AO353_09830 0.45 -1.6
2,147,923 + AO353_09830 0.45 -0.9
2,147,923 + AO353_09830 0.45 -1.2
2,147,923 + AO353_09830 0.45 -1.6
2,148,153 + AO353_09830 0.65 -0.6
2,148,153 + AO353_09830 0.65 -0.1
2,148,153 + AO353_09830 0.65 -0.0
2,148,317 - AO353_09830 0.80 +2.4
2,148,429 + AO353_09830 0.89 -1.2
2,148,429 + AO353_09830 0.89 -0.3
2,148,429 + AO353_09830 0.89 -0.2
2,148,430 - AO353_09830 0.89 -1.2
2,148,430 - AO353_09830 0.89 -1.2
2,148,430 - AO353_09830 0.89 +0.4
2,148,430 - AO353_09830 0.89 +0.4
2,148,507 + -0.9
2,148,508 - -1.6
2,148,508 - -0.8
2,148,508 - -0.2
2,148,508 - -0.9
2,148,508 - -0.6
2,148,508 - -1.4
2,148,555 + -1.2
2,148,556 - -0.1
2,148,556 - -1.6
2,148,556 - -0.6
2,148,718 + AO353_09835 0.78 +0.5
2,148,718 + AO353_09835 0.78 +2.0
2,148,718 + AO353_09835 0.78 -1.6
2,148,718 + AO353_09835 0.78 +2.0
2,148,718 + AO353_09835 0.78 +0.6
2,148,718 + AO353_09835 0.78 -0.2
2,148,718 + AO353_09835 0.78 +0.4
2,148,719 - AO353_09835 0.78 +0.8
2,148,719 - AO353_09835 0.78 +0.2
2,148,719 - AO353_09835 0.78 -1.6
2,148,756 + +2.0
2,148,756 + -0.2
2,148,756 + +0.4
2,148,757 - -0.9
2,148,757 - +0.1
2,148,785 - +1.3
2,148,839 + +0.4
2,148,881 - +2.7
2,148,918 + -0.6
2,148,919 - +0.1
2,148,945 + +1.0
2,149,203 + AO353_09840 0.44 +0.1
2,149,203 + AO353_09840 0.44 -0.3
2,149,203 + AO353_09840 0.44 +1.1
2,149,203 + AO353_09840 0.44 +0.8
2,149,203 + AO353_09840 0.44 +0.4
2,149,203 + AO353_09840 0.44 +1.6
2,149,203 + AO353_09840 0.44 +2.0
2,149,203 + AO353_09840 0.44 +0.4
2,149,203 + AO353_09840 0.44 -0.6
2,149,204 - AO353_09840 0.44 -0.1
2,149,204 - AO353_09840 0.44 +1.8
2,149,204 - AO353_09840 0.44 +1.4
2,149,204 - AO353_09840 0.44 +0.4
2,149,204 - AO353_09840 0.44 +1.4
2,149,204 - AO353_09840 0.44 -0.6
2,149,204 - AO353_09840 0.44 +2.7
2,149,204 - AO353_09840 0.44 -0.9
2,149,283 + AO353_09840 0.58 +0.1
2,149,284 - AO353_09840 0.58 +2.0
2,149,284 - AO353_09840 0.58 -0.1
2,149,368 + AO353_09840 0.73 -1.9
2,149,468 + -0.9
2,149,468 + +0.8
2,149,468 + +0.4
2,149,468 + +1.1
2,149,468 + +0.5
2,149,469 - -0.6
2,149,469 - -0.6
2,149,523 + +1.0
2,149,523 + +0.6
2,149,523 + -1.2
2,149,523 + +0.4

Or see this region's nucleotide sequence