Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08315

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08305 and AO353_08310 are separated by 124 nucleotidesAO353_08310 and AO353_08315 are separated by 99 nucleotidesAO353_08315 and AO353_08320 are separated by 54 nucleotidesAO353_08320 and AO353_08325 are separated by 30 nucleotides AO353_08305: AO353_08305 - phosphopantetheine adenylyltransferase, at 1,825,612 to 1,826,091 _08305 AO353_08310: AO353_08310 - ferredoxin, at 1,826,216 to 1,826,467 _08310 AO353_08315: AO353_08315 - multidrug transporter, at 1,826,567 to 1,826,887 _08315 AO353_08320: AO353_08320 - 5-hydroxymethyluracil DNA glycosylase, at 1,826,942 to 1,827,754 _08320 AO353_08325: AO353_08325 - histidine kinase, at 1,827,785 to 1,828,654 _08325 Position (kb) 1826 1827Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1826.089 kb on + strandat 1826.089 kb on + strandat 1826.089 kb on + strandat 1826.090 kb on - strandat 1826.090 kb on - strandat 1826.090 kb on - strandat 1826.090 kb on - strandat 1826.090 kb on - strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.109 kb on + strandat 1826.110 kb on - strandat 1826.110 kb on - strandat 1826.110 kb on - strandat 1826.166 kb on + strandat 1826.441 kb on + strand, within AO353_08310at 1826.441 kb on + strand, within AO353_08310at 1826.453 kb on - strandat 1826.469 kb on + strandat 1826.469 kb on + strandat 1826.470 kb on - strandat 1826.515 kb on - strandat 1826.515 kb on - strandat 1826.562 kb on + strandat 1826.562 kb on + strandat 1826.562 kb on + strandat 1826.562 kb on + strandat 1826.563 kb on - strandat 1826.568 kb on + strandat 1826.568 kb on + strandat 1826.568 kb on + strandat 1826.568 kb on + strandat 1826.568 kb on + strandat 1826.568 kb on + strandat 1826.568 kb on + strandat 1826.568 kb on + strandat 1826.568 kb on + strandat 1826.568 kb on + strandat 1826.569 kb on - strandat 1826.569 kb on - strandat 1826.569 kb on - strandat 1826.569 kb on - strandat 1826.569 kb on - strandat 1826.569 kb on - strandat 1826.593 kb on + strandat 1826.698 kb on + strand, within AO353_08315at 1826.698 kb on + strand, within AO353_08315at 1826.698 kb on + strand, within AO353_08315at 1826.698 kb on + strand, within AO353_08315at 1826.698 kb on + strand, within AO353_08315at 1826.698 kb on + strand, within AO353_08315at 1826.698 kb on + strand, within AO353_08315at 1826.698 kb on + strand, within AO353_08315at 1826.698 kb on + strand, within AO353_08315at 1826.699 kb on - strand, within AO353_08315at 1826.699 kb on - strand, within AO353_08315at 1826.699 kb on - strand, within AO353_08315at 1826.699 kb on - strand, within AO353_08315at 1826.699 kb on - strand, within AO353_08315at 1826.699 kb on - strand, within AO353_08315at 1826.699 kb on - strand, within AO353_08315at 1826.772 kb on + strand, within AO353_08315at 1826.796 kb on + strand, within AO353_08315at 1826.797 kb on - strand, within AO353_08315at 1826.797 kb on - strand, within AO353_08315at 1826.797 kb on - strand, within AO353_08315at 1826.797 kb on - strand, within AO353_08315at 1826.797 kb on - strand, within AO353_08315at 1826.837 kb on + strand, within AO353_08315at 1826.837 kb on + strand, within AO353_08315at 1826.838 kb on - strand, within AO353_08315at 1826.838 kb on - strand, within AO353_08315at 1826.920 kb on + strandat 1826.920 kb on + strandat 1826.920 kb on + strandat 1826.920 kb on + strandat 1826.920 kb on + strandat 1826.920 kb on + strandat 1826.920 kb on + strandat 1826.921 kb on - strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.924 kb on + strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.925 kb on - strandat 1826.926 kb on + strandat 1826.926 kb on + strandat 1826.927 kb on - strandat 1826.927 kb on - strandat 1826.927 kb on - strandat 1826.933 kb on + strandat 1826.934 kb on - strandat 1827.042 kb on + strand, within AO353_08320at 1827.043 kb on - strand, within AO353_08320at 1827.066 kb on + strand, within AO353_08320at 1827.066 kb on + strand, within AO353_08320at 1827.168 kb on + strand, within AO353_08320at 1827.168 kb on + strand, within AO353_08320at 1827.169 kb on - strand, within AO353_08320at 1827.169 kb on - strand, within AO353_08320at 1827.169 kb on - strand, within AO353_08320at 1827.240 kb on + strand, within AO353_08320at 1827.240 kb on + strand, within AO353_08320at 1827.241 kb on - strand, within AO353_08320at 1827.241 kb on - strand, within AO353_08320at 1827.241 kb on - strand, within AO353_08320at 1827.241 kb on - strand, within AO353_08320at 1827.241 kb on - strand, within AO353_08320at 1827.241 kb on - strand, within AO353_08320at 1827.323 kb on + strand, within AO353_08320at 1827.323 kb on + strand, within AO353_08320at 1827.323 kb on + strand, within AO353_08320at 1827.438 kb on + strand, within AO353_08320at 1827.579 kb on + strand, within AO353_08320at 1827.579 kb on + strand, within AO353_08320at 1827.579 kb on + strand, within AO353_08320at 1827.579 kb on + strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.580 kb on - strand, within AO353_08320at 1827.837 kb on + strandat 1827.837 kb on + strandat 1827.837 kb on + strandat 1827.838 kb on - strandat 1827.855 kb on + strandat 1827.855 kb on + strandat 1827.855 kb on + strandat 1827.856 kb on - strandat 1827.856 kb on - strandat 1827.856 kb on - strandat 1827.856 kb on - strandat 1827.856 kb on - strandat 1827.881 kb on - strand, within AO353_08325

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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1,826,089 + -0.7
1,826,089 + -0.7
1,826,089 + +0.3
1,826,090 - +2.3
1,826,090 - +0.9
1,826,090 - +0.3
1,826,090 - +0.6
1,826,090 - -2.3
1,826,109 + +0.1
1,826,109 + +1.3
1,826,109 + +1.3
1,826,109 + +3.3
1,826,109 + +1.6
1,826,109 + +3.6
1,826,109 + +1.5
1,826,109 + +2.1
1,826,109 + +4.0
1,826,110 - -0.9
1,826,110 - -2.0
1,826,110 - -0.3
1,826,166 + -1.3
1,826,441 + AO353_08310 0.89 -0.3
1,826,441 + AO353_08310 0.89 -2.0
1,826,453 - -2.8
1,826,469 + +0.3
1,826,469 + -0.9
1,826,470 - +0.1
1,826,515 - -0.7
1,826,515 - -1.3
1,826,562 + -1.3
1,826,562 + +0.9
1,826,562 + -1.3
1,826,562 + -0.8
1,826,563 - -2.5
1,826,568 + -0.5
1,826,568 + +0.3
1,826,568 + +1.3
1,826,568 + +0.3
1,826,568 + -1.3
1,826,568 + -0.5
1,826,568 + +1.3
1,826,568 + -0.4
1,826,568 + +2.3
1,826,568 + +0.7
1,826,569 - +1.3
1,826,569 - +1.1
1,826,569 - +0.3
1,826,569 - +0.3
1,826,569 - -1.3
1,826,569 - +2.5
1,826,593 + +1.3
1,826,698 + AO353_08315 0.41 -2.7
1,826,698 + AO353_08315 0.41 -2.3
1,826,698 + AO353_08315 0.41 -1.7
1,826,698 + AO353_08315 0.41 +0.7
1,826,698 + AO353_08315 0.41 +0.3
1,826,698 + AO353_08315 0.41 +0.0
1,826,698 + AO353_08315 0.41 -0.7
1,826,698 + AO353_08315 0.41 +0.2
1,826,698 + AO353_08315 0.41 -0.5
1,826,699 - AO353_08315 0.41 -2.0
1,826,699 - AO353_08315 0.41 -1.1
1,826,699 - AO353_08315 0.41 -2.7
1,826,699 - AO353_08315 0.41 -0.9
1,826,699 - AO353_08315 0.41 -1.3
1,826,699 - AO353_08315 0.41 -2.0
1,826,699 - AO353_08315 0.41 -1.1
1,826,772 + AO353_08315 0.64 +2.3
1,826,796 + AO353_08315 0.71 +0.0
1,826,797 - AO353_08315 0.72 -0.6
1,826,797 - AO353_08315 0.72 +1.6
1,826,797 - AO353_08315 0.72 -1.1
1,826,797 - AO353_08315 0.72 -0.7
1,826,797 - AO353_08315 0.72 +1.3
1,826,837 + AO353_08315 0.84 +0.7
1,826,837 + AO353_08315 0.84 +0.3
1,826,838 - AO353_08315 0.84 -1.2
1,826,838 - AO353_08315 0.84 -0.7
1,826,920 + -0.3
1,826,920 + +0.7
1,826,920 + +1.3
1,826,920 + +0.3
1,826,920 + -1.0
1,826,920 + -1.0
1,826,920 + +2.3
1,826,921 - +2.5
1,826,924 + +1.9
1,826,924 + +0.5
1,826,924 + +1.0
1,826,924 + +0.3
1,826,924 + -0.0
1,826,924 + -0.9
1,826,924 + -0.3
1,826,924 + +0.3
1,826,924 + +0.7
1,826,924 + +2.6
1,826,924 + -1.3
1,826,925 - -1.3
1,826,925 - -1.4
1,826,925 - -1.3
1,826,925 - -1.0
1,826,925 - -1.1
1,826,925 - -0.4
1,826,925 - -1.7
1,826,925 - -0.7
1,826,925 - +0.9
1,826,925 - +0.8
1,826,925 - -0.1
1,826,925 - -0.5
1,826,925 - +0.3
1,826,925 - -1.3
1,826,925 - -0.7
1,826,925 - +1.3
1,826,925 - +1.3
1,826,926 + -1.5
1,826,926 + +0.3
1,826,927 - +0.9
1,826,927 - +0.3
1,826,927 - +0.3
1,826,933 + -1.3
1,826,934 - -1.3
1,827,042 + AO353_08320 0.12 +0.3
1,827,043 - AO353_08320 0.12 +1.1
1,827,066 + AO353_08320 0.15 +1.3
1,827,066 + AO353_08320 0.15 +1.3
1,827,168 + AO353_08320 0.28 +2.3
1,827,168 + AO353_08320 0.28 +0.3
1,827,169 - AO353_08320 0.28 -1.3
1,827,169 - AO353_08320 0.28 -0.7
1,827,169 - AO353_08320 0.28 -2.5
1,827,240 + AO353_08320 0.37 -1.7
1,827,240 + AO353_08320 0.37 -0.0
1,827,241 - AO353_08320 0.37 +1.5
1,827,241 - AO353_08320 0.37 +1.1
1,827,241 - AO353_08320 0.37 +0.3
1,827,241 - AO353_08320 0.37 +0.3
1,827,241 - AO353_08320 0.37 -1.3
1,827,241 - AO353_08320 0.37 -0.7
1,827,323 + AO353_08320 0.47 +0.9
1,827,323 + AO353_08320 0.47 +0.9
1,827,323 + AO353_08320 0.47 +0.5
1,827,438 + AO353_08320 0.61 +0.3
1,827,579 + AO353_08320 0.78 +0.6
1,827,579 + AO353_08320 0.78 +1.3
1,827,579 + AO353_08320 0.78 +1.1
1,827,579 + AO353_08320 0.78 +2.6
1,827,580 - AO353_08320 0.78 -0.3
1,827,580 - AO353_08320 0.78 +2.1
1,827,580 - AO353_08320 0.78 +1.5
1,827,580 - AO353_08320 0.78 +1.9
1,827,580 - AO353_08320 0.78 +1.6
1,827,580 - AO353_08320 0.78 -1.3
1,827,580 - AO353_08320 0.78 +1.5
1,827,580 - AO353_08320 0.78 +1.1
1,827,580 - AO353_08320 0.78 +0.8
1,827,580 - AO353_08320 0.78 -0.7
1,827,580 - AO353_08320 0.78 -1.7
1,827,837 + +2.3
1,827,837 + +1.0
1,827,837 + +0.9
1,827,838 - -0.3
1,827,855 + +0.5
1,827,855 + +0.7
1,827,855 + -0.5
1,827,856 - +0.6
1,827,856 - +0.8
1,827,856 - +0.7
1,827,856 - -1.3
1,827,856 - +0.9
1,827,881 - AO353_08325 0.11 -0.1

Or see this region's nucleotide sequence