Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07915

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07905 and AO353_07910 are separated by 111 nucleotidesAO353_07910 and AO353_07915 are separated by 328 nucleotidesAO353_07915 and AO353_07920 are separated by 244 nucleotides AO353_07905: AO353_07905 - hypothetical protein, at 1,744,416 to 1,744,955 _07905 AO353_07910: AO353_07910 - hypothetical protein, at 1,745,067 to 1,745,336 _07910 AO353_07915: AO353_07915 - hypothetical protein, at 1,745,665 to 1,746,039 _07915 AO353_07920: AO353_07920 - hypothetical protein, at 1,746,284 to 1,746,643 _07920 Position (kb) 1745 1746 1747Strain fitness (log2 ratio) -2 -1 0 1 2at 1744.695 kb on + strand, within AO353_07905at 1744.695 kb on + strand, within AO353_07905at 1744.737 kb on + strand, within AO353_07905at 1744.738 kb on - strand, within AO353_07905at 1744.764 kb on - strand, within AO353_07905at 1744.770 kb on - strand, within AO353_07905at 1744.821 kb on - strand, within AO353_07905at 1744.884 kb on + strand, within AO353_07905at 1744.887 kb on + strand, within AO353_07905at 1744.907 kb on - strandat 1745.058 kb on + strandat 1745.059 kb on - strandat 1745.066 kb on - strandat 1745.115 kb on - strand, within AO353_07910at 1745.158 kb on - strand, within AO353_07910at 1745.179 kb on + strand, within AO353_07910at 1745.274 kb on - strand, within AO353_07910at 1745.307 kb on + strand, within AO353_07910at 1745.390 kb on + strandat 1745.390 kb on + strandat 1745.391 kb on - strandat 1745.480 kb on + strandat 1745.481 kb on - strandat 1745.509 kb on + strandat 1745.509 kb on + strandat 1745.536 kb on + strandat 1745.547 kb on - strandat 1745.623 kb on - strandat 1745.650 kb on - strandat 1745.693 kb on + strandat 1745.699 kb on + strandat 1745.727 kb on - strand, within AO353_07915at 1745.727 kb on - strand, within AO353_07915at 1745.734 kb on - strand, within AO353_07915at 1745.771 kb on + strand, within AO353_07915at 1745.772 kb on - strand, within AO353_07915at 1745.848 kb on + strand, within AO353_07915at 1745.848 kb on + strand, within AO353_07915at 1745.872 kb on - strand, within AO353_07915at 1745.883 kb on - strand, within AO353_07915at 1745.916 kb on - strand, within AO353_07915at 1745.916 kb on - strand, within AO353_07915at 1745.916 kb on - strand, within AO353_07915at 1745.980 kb on + strand, within AO353_07915at 1746.041 kb on + strandat 1746.132 kb on - strandat 1746.158 kb on + strandat 1746.158 kb on + strandat 1746.177 kb on - strandat 1746.177 kb on - strandat 1746.218 kb on + strandat 1746.218 kb on + strandat 1746.219 kb on - strandat 1746.219 kb on - strandat 1746.265 kb on - strandat 1746.312 kb on - strandat 1746.337 kb on + strand, within AO353_07920at 1746.337 kb on + strand, within AO353_07920at 1746.341 kb on + strand, within AO353_07920at 1746.341 kb on + strand, within AO353_07920at 1746.341 kb on + strand, within AO353_07920at 1746.367 kb on + strand, within AO353_07920at 1746.368 kb on - strand, within AO353_07920at 1746.403 kb on + strand, within AO353_07920at 1746.407 kb on + strand, within AO353_07920at 1746.411 kb on - strand, within AO353_07920at 1746.482 kb on - strand, within AO353_07920at 1746.484 kb on + strand, within AO353_07920at 1746.484 kb on + strand, within AO353_07920at 1746.485 kb on - strand, within AO353_07920at 1746.485 kb on - strand, within AO353_07920at 1746.485 kb on - strand, within AO353_07920at 1746.602 kb on - strand, within AO353_07920at 1746.614 kb on - strandat 1746.668 kb on - strandat 1746.811 kb on + strandat 1746.812 kb on - strandat 1746.835 kb on + strandat 1746.908 kb on + strandat 1746.922 kb on + strandat 1746.922 kb on + strandat 1746.923 kb on - strandat 1746.923 kb on - strandat 1746.932 kb on - strandat 1747.007 kb on - strandat 1747.007 kb on - strandat 1747.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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1,744,695 + AO353_07905 0.52 -0.5
1,744,695 + AO353_07905 0.52 +1.9
1,744,737 + AO353_07905 0.59 +0.3
1,744,738 - AO353_07905 0.60 +1.0
1,744,764 - AO353_07905 0.64 +0.6
1,744,770 - AO353_07905 0.66 -0.3
1,744,821 - AO353_07905 0.75 -0.1
1,744,884 + AO353_07905 0.87 +0.3
1,744,887 + AO353_07905 0.87 -2.1
1,744,907 - +1.3
1,745,058 + +0.3
1,745,059 - -0.7
1,745,066 - -0.1
1,745,115 - AO353_07910 0.18 +0.6
1,745,158 - AO353_07910 0.34 +0.3
1,745,179 + AO353_07910 0.41 +0.3
1,745,274 - AO353_07910 0.77 +0.4
1,745,307 + AO353_07910 0.89 -1.7
1,745,390 + +0.7
1,745,390 + +0.3
1,745,391 - -0.2
1,745,480 + +0.3
1,745,481 - +1.9
1,745,509 + -1.3
1,745,509 + +0.9
1,745,536 + +0.3
1,745,547 - +1.9
1,745,623 - +0.3
1,745,650 - +0.3
1,745,693 + +0.3
1,745,699 + -1.3
1,745,727 - AO353_07915 0.17 +0.3
1,745,727 - AO353_07915 0.17 +1.3
1,745,734 - AO353_07915 0.18 +0.2
1,745,771 + AO353_07915 0.28 +1.6
1,745,772 - AO353_07915 0.29 +1.3
1,745,848 + AO353_07915 0.49 +1.3
1,745,848 + AO353_07915 0.49 -1.3
1,745,872 - AO353_07915 0.55 +1.6
1,745,883 - AO353_07915 0.58 -0.0
1,745,916 - AO353_07915 0.67 +1.5
1,745,916 - AO353_07915 0.67 +1.3
1,745,916 - AO353_07915 0.67 +0.0
1,745,980 + AO353_07915 0.84 +0.9
1,746,041 + +1.5
1,746,132 - -2.3
1,746,158 + +0.3
1,746,158 + -0.8
1,746,177 - +0.5
1,746,177 - +0.0
1,746,218 + -0.2
1,746,218 + +0.9
1,746,219 - +0.5
1,746,219 - +1.3
1,746,265 - +1.5
1,746,312 - +0.3
1,746,337 + AO353_07920 0.15 -2.0
1,746,337 + AO353_07920 0.15 +0.6
1,746,341 + AO353_07920 0.16 -0.1
1,746,341 + AO353_07920 0.16 +0.3
1,746,341 + AO353_07920 0.16 +0.3
1,746,367 + AO353_07920 0.23 +1.3
1,746,368 - AO353_07920 0.23 -0.7
1,746,403 + AO353_07920 0.33 +0.7
1,746,407 + AO353_07920 0.34 -1.3
1,746,411 - AO353_07920 0.35 +0.3
1,746,482 - AO353_07920 0.55 -2.3
1,746,484 + AO353_07920 0.56 -0.4
1,746,484 + AO353_07920 0.56 -0.5
1,746,485 - AO353_07920 0.56 -1.0
1,746,485 - AO353_07920 0.56 +1.0
1,746,485 - AO353_07920 0.56 +0.7
1,746,602 - AO353_07920 0.88 +0.3
1,746,614 - -1.3
1,746,668 - +0.9
1,746,811 + +0.9
1,746,812 - -0.0
1,746,835 + -0.3
1,746,908 + +0.3
1,746,922 + +0.9
1,746,922 + +0.3
1,746,923 - -0.5
1,746,923 - -0.7
1,746,932 - +0.7
1,747,007 - +0.7
1,747,007 - -0.4
1,747,038 + -1.3

Or see this region's nucleotide sequence