Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03870

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03865 and AO353_03870 are separated by 159 nucleotidesAO353_03870 and AO353_03875 are separated by 75 nucleotidesAO353_03875 and AO353_03880 are separated by 227 nucleotides AO353_03865: AO353_03865 - hypothetical protein, at 826,127 to 827,764 _03865 AO353_03870: AO353_03870 - LysR family transcriptional regulator, at 827,924 to 828,805 _03870 AO353_03875: AO353_03875 - 3-beta hydroxysteroid dehydrogenase, at 828,881 to 829,495 _03875 AO353_03880: AO353_03880 - MBL fold metallo-hydrolase, at 829,723 to 830,607 _03880 Position (kb) 827 828 829Strain fitness (log2 ratio) -2 -1 0 1 2at 826.929 kb on + strand, within AO353_03865at 826.930 kb on - strand, within AO353_03865at 827.091 kb on - strand, within AO353_03865at 827.091 kb on - strand, within AO353_03865at 827.374 kb on + strand, within AO353_03865at 827.375 kb on - strand, within AO353_03865at 827.592 kb on + strand, within AO353_03865at 827.593 kb on - strand, within AO353_03865at 827.683 kb on + strandat 827.684 kb on - strandat 827.733 kb on - strandat 827.744 kb on + strandat 827.744 kb on + strandat 827.744 kb on + strandat 827.745 kb on - strandat 827.745 kb on - strandat 827.745 kb on - strandat 827.764 kb on + strandat 827.765 kb on - strandat 827.765 kb on - strandat 827.765 kb on - strandat 827.771 kb on - strandat 827.878 kb on + strandat 827.888 kb on + strandat 827.889 kb on - strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.924 kb on - strandat 827.924 kb on - strandat 827.924 kb on - strandat 828.068 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.586 kb on - strand, within AO353_03870at 828.716 kb on + strand, within AO353_03870at 828.716 kb on + strand, within AO353_03870at 828.719 kb on + strandat 828.719 kb on + strandat 828.719 kb on + strandat 828.720 kb on - strandat 828.720 kb on - strandat 828.720 kb on - strandat 828.832 kb on - strandat 828.832 kb on - strandat 828.832 kb on - strandat 828.872 kb on + strandat 828.872 kb on + strandat 828.872 kb on + strandat 828.872 kb on + strandat 828.873 kb on - strandat 828.873 kb on - strandat 828.885 kb on + strandat 828.885 kb on + strandat 828.885 kb on + strandat 828.911 kb on - strandat 829.027 kb on + strand, within AO353_03875at 829.108 kb on - strand, within AO353_03875at 829.108 kb on - strand, within AO353_03875at 829.108 kb on - strand, within AO353_03875at 829.108 kb on - strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.138 kb on - strand, within AO353_03875at 829.138 kb on - strand, within AO353_03875at 829.138 kb on - strand, within AO353_03875at 829.138 kb on - strand, within AO353_03875at 829.217 kb on + strand, within AO353_03875at 829.218 kb on - strand, within AO353_03875at 829.515 kb on + strandat 829.515 kb on + strandat 829.515 kb on + strandat 829.515 kb on + strandat 829.516 kb on - strandat 829.516 kb on - strandat 829.516 kb on - strandat 829.611 kb on + strandat 829.611 kb on + strandat 829.611 kb on + strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.632 kb on - strandat 829.632 kb on - strandat 829.632 kb on - strandat 829.632 kb on - strandat 829.632 kb on - strandat 829.711 kb on + strandat 829.711 kb on + strandat 829.711 kb on + strandat 829.712 kb on - strandat 829.712 kb on - strandat 829.712 kb on - strandat 829.724 kb on + strandat 829.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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826,929 + AO353_03865 0.49 +1.0
826,930 - AO353_03865 0.49 +0.0
827,091 - AO353_03865 0.59 +0.0
827,091 - AO353_03865 0.59 -2.0
827,374 + AO353_03865 0.76 +1.0
827,375 - AO353_03865 0.76 +0.0
827,592 + AO353_03865 0.89 +0.8
827,593 - AO353_03865 0.89 -0.8
827,683 + +1.0
827,684 - -0.6
827,733 - +1.2
827,744 + +1.0
827,744 + +2.0
827,744 + +0.0
827,745 - +1.3
827,745 - +0.0
827,745 - -0.7
827,764 + +0.4
827,765 - -1.0
827,765 - +0.8
827,765 - +0.0
827,771 - +0.7
827,878 + +0.0
827,888 + +1.6
827,889 - +0.0
827,923 + +1.0
827,923 + +0.3
827,923 + -0.2
827,923 + +1.3
827,923 + +0.0
827,923 + -1.6
827,923 + +0.0
827,924 - +1.0
827,924 - +0.2
827,924 - +0.8
828,068 + AO353_03870 0.16 -2.3
828,353 + AO353_03870 0.49 +0.0
828,353 + AO353_03870 0.49 -1.0
828,353 + AO353_03870 0.49 -0.8
828,353 + AO353_03870 0.49 +1.0
828,354 - AO353_03870 0.49 -0.6
828,354 - AO353_03870 0.49 +0.0
828,354 - AO353_03870 0.49 +0.3
828,354 - AO353_03870 0.49 -1.4
828,354 - AO353_03870 0.49 +0.0
828,354 - AO353_03870 0.49 -1.6
828,354 - AO353_03870 0.49 +1.0
828,586 - AO353_03870 0.75 +0.3
828,716 + AO353_03870 0.90 -0.6
828,716 + AO353_03870 0.90 +0.4
828,719 + +0.9
828,719 + -0.6
828,719 + +0.0
828,720 - -0.4
828,720 - -1.2
828,720 - -1.6
828,832 - +1.3
828,832 - +0.4
828,832 - -1.0
828,872 + +1.2
828,872 + +0.8
828,872 + -0.6
828,872 + -1.5
828,873 - +0.0
828,873 - +0.0
828,885 + +1.6
828,885 + +0.4
828,885 + -1.6
828,911 - -0.3
829,027 + AO353_03875 0.24 -0.8
829,108 - AO353_03875 0.37 +1.0
829,108 - AO353_03875 0.37 +1.3
829,108 - AO353_03875 0.37 +2.0
829,108 - AO353_03875 0.37 +0.0
829,137 + AO353_03875 0.42 -0.4
829,137 + AO353_03875 0.42 +0.6
829,137 + AO353_03875 0.42 +0.6
829,137 + AO353_03875 0.42 -0.6
829,137 + AO353_03875 0.42 +0.3
829,138 - AO353_03875 0.42 -1.0
829,138 - AO353_03875 0.42 -2.0
829,138 - AO353_03875 0.42 -1.0
829,138 - AO353_03875 0.42 -1.0
829,217 + AO353_03875 0.55 +0.3
829,218 - AO353_03875 0.55 +0.6
829,515 + +0.3
829,515 + +0.2
829,515 + +0.0
829,515 + +1.0
829,516 - +1.2
829,516 - +1.3
829,516 - +1.2
829,611 + -1.3
829,611 + -1.0
829,611 + +0.0
829,612 - -0.4
829,612 - -0.7
829,612 - +1.3
829,612 - -0.6
829,612 - +0.0
829,612 - +0.8
829,632 - +0.4
829,632 - +1.6
829,632 - -0.6
829,632 - -1.0
829,632 - +1.2
829,711 + +0.3
829,711 + +0.0
829,711 + +1.8
829,712 - +2.3
829,712 - +0.0
829,712 - -0.3
829,724 + +0.0
829,725 - +1.8

Or see this region's nucleotide sequence