Experiment: Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00880 and AO353_00885 are separated by 104 nucleotides AO353_00885 and AO353_00890 are separated by 54 nucleotides
AO353_00880: AO353_00880 - 2-methylcitrate dehydratase, at 198,525 to 200,009
_00880
AO353_00885: AO353_00885 - 3-methylitaconate isomerase, at 200,114 to 201,304
_00885
AO353_00890: AO353_00890 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 201,359 to 203,953
_00890
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.153 kb on + strand, within AO353_00880 at 199.153 kb on + strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.234 kb on + strand, within AO353_00880 at 199.234 kb on + strand, within AO353_00880 at 199.235 kb on - strand, within AO353_00880 at 199.235 kb on - strand at 199.375 kb on + strand, within AO353_00880 at 199.376 kb on - strand, within AO353_00880 at 199.705 kb on + strand, within AO353_00880 at 199.705 kb on + strand, within AO353_00880 at 199.705 kb on + strand, within AO353_00880 at 199.706 kb on - strand, within AO353_00880 at 199.706 kb on - strand, within AO353_00880 at 199.725 kb on - strand, within AO353_00880 at 199.817 kb on + strand, within AO353_00880 at 199.942 kb on + strand at 199.942 kb on + strand at 199.942 kb on + strand at 199.942 kb on + strand at 199.942 kb on + strand at 199.943 kb on - strand at 199.943 kb on - strand at 199.972 kb on + strand at 199.973 kb on - strand at 200.156 kb on + strand at 200.156 kb on + strand at 200.157 kb on - strand at 200.394 kb on - strand, within AO353_00885 at 200.394 kb on - strand, within AO353_00885 at 200.394 kb on - strand, within AO353_00885 at 200.443 kb on - strand at 200.538 kb on + strand, within AO353_00885 at 200.539 kb on - strand, within AO353_00885 at 200.921 kb on - strand, within AO353_00885 at 200.999 kb on - strand, within AO353_00885 at 200.999 kb on - strand, within AO353_00885 at 201.125 kb on - strand at 201.265 kb on + strand at 201.267 kb on + strand at 201.267 kb on + strand at 201.267 kb on + strand at 201.267 kb on + strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.293 kb on + strand at 201.293 kb on + strand at 201.293 kb on + strand at 201.294 kb on - strand at 201.304 kb on + strand at 201.305 kb on - strand at 201.305 kb on - strand at 201.305 kb on - strand at 201.314 kb on + strand at 201.315 kb on - strand at 201.360 kb on + strand at 201.424 kb on - strand at 201.424 kb on - strand at 201.424 kb on - strand at 201.424 kb on - strand at 201.424 kb on - strand at 201.500 kb on - strand at 201.775 kb on - strand, within AO353_00890 at 201.940 kb on - strand, within AO353_00890 at 201.982 kb on - strand, within AO353_00890 at 201.982 kb on - strand, within AO353_00890 at 201.982 kb on - strand, within AO353_00890 at 201.982 kb on - strand, within AO353_00890 at 202.131 kb on + strand, within AO353_00890 at 202.131 kb on + strand, within AO353_00890 at 202.131 kb on + strand, within AO353_00890 at 202.132 kb on - strand, within AO353_00890 at 202.156 kb on - strand, within AO353_00890 at 202.156 kb on - strand, within AO353_00890 at 202.209 kb on + strand, within AO353_00890 at 202.210 kb on - strand, within AO353_00890 at 202.210 kb on - strand, within AO353_00890 at 202.210 kb on - strand, within AO353_00890
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml remove 199,144 + AO353_00880 0.42 -0.8 199,144 + AO353_00880 0.42 -0.1 199,144 + AO353_00880 0.42 -2.4 199,144 + AO353_00880 0.42 +0.9 199,144 + AO353_00880 0.42 +1.1 199,144 + AO353_00880 0.42 +0.2 199,144 + AO353_00880 0.42 -0.5 199,145 - AO353_00880 0.42 -0.8 199,145 - AO353_00880 0.42 -1.1 199,145 - AO353_00880 0.42 +1.1 199,145 - AO353_00880 0.42 +0.2 199,145 - AO353_00880 0.42 -0.1 199,145 - AO353_00880 0.42 -0.1 199,145 - AO353_00880 0.42 +0.4 199,153 + AO353_00880 0.42 +0.9 199,153 + AO353_00880 0.42 +1.0 199,176 - AO353_00880 0.44 +1.2 199,176 - AO353_00880 0.44 -0.8 199,176 - AO353_00880 0.44 -1.4 199,176 - AO353_00880 0.44 -0.4 199,176 - AO353_00880 0.44 -0.1 199,234 + AO353_00880 0.48 -0.5 199,234 + AO353_00880 0.48 -0.7 199,235 - AO353_00880 0.48 +0.1 199,235 - +1.5 199,375 + AO353_00880 0.57 -0.1 199,376 - AO353_00880 0.57 +0.6 199,705 + AO353_00880 0.79 -0.4 199,705 + AO353_00880 0.79 -0.1 199,705 + AO353_00880 0.79 +1.5 199,706 - AO353_00880 0.80 +1.5 199,706 - AO353_00880 0.80 -0.1 199,725 - AO353_00880 0.81 -0.4 199,817 + AO353_00880 0.87 -0.1 199,942 + +0.7 199,942 + +2.2 199,942 + -2.1 199,942 + -1.1 199,942 + +0.9 199,943 - +0.6 199,943 - -2.7 199,972 + +0.5 199,973 - +1.5 200,156 + +0.9 200,156 + -1.7 200,157 - +1.9 200,394 - AO353_00885 0.24 -0.5 200,394 - AO353_00885 0.24 +0.5 200,394 - AO353_00885 0.24 +0.2 200,443 - -1.1 200,538 + AO353_00885 0.36 -1.1 200,539 - AO353_00885 0.36 -0.5 200,921 - AO353_00885 0.68 -0.7 200,999 - AO353_00885 0.74 +0.5 200,999 - AO353_00885 0.74 -0.4 201,125 - +1.5 201,265 + -0.7 201,267 + -0.1 201,267 + -1.1 201,267 + -1.1 201,267 + -1.1 201,268 - +0.3 201,268 - -0.1 201,268 - +0.9 201,268 - +1.5 201,268 - +1.5 201,268 - -0.1 201,293 + -0.1 201,293 + -0.1 201,293 + +0.2 201,294 - -0.1 201,304 + -2.7 201,305 - -1.4 201,305 - -1.1 201,305 - -0.1 201,314 + +3.4 201,315 - +0.5 201,360 + -0.4 201,424 - -1.1 201,424 - -1.1 201,424 - -0.1 201,424 - +1.5 201,424 - +0.9 201,500 - -1.7 201,775 - AO353_00890 0.16 -1.7 201,940 - AO353_00890 0.22 -0.7 201,982 - AO353_00890 0.24 -2.7 201,982 - AO353_00890 0.24 +0.9 201,982 - AO353_00890 0.24 -1.1 201,982 - AO353_00890 0.24 -0.1 202,131 + AO353_00890 0.30 -0.1 202,131 + AO353_00890 0.30 +0.3 202,131 + AO353_00890 0.30 -0.1 202,132 - AO353_00890 0.30 -0.1 202,156 - AO353_00890 0.31 -0.3 202,156 - AO353_00890 0.31 +0.9 202,209 + AO353_00890 0.33 -0.1 202,210 - AO353_00890 0.33 -1.4 202,210 - AO353_00890 0.33 +0.9 202,210 - AO353_00890 0.33 -2.1
Or see this region's nucleotide sequence