Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00560

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00550 and AO353_00555 are separated by 48 nucleotidesAO353_00555 and AO353_00560 are separated by 200 nucleotidesAO353_00560 and AO353_00565 are separated by 222 nucleotides AO353_00550: AO353_00550 - MATE family efflux transporter, at 114,927 to 116,336 _00550 AO353_00555: AO353_00555 - sulfurtransferase, at 116,385 to 116,636 _00555 AO353_00560: AO353_00560 - 23S rRNA methyltransferase, at 116,837 to 117,910 _00560 AO353_00565: AO353_00565 - aconitate hydratase, at 118,133 to 120,883 _00565 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 115.876 kb on + strand, within AO353_00550at 115.877 kb on - strand, within AO353_00550at 115.998 kb on + strand, within AO353_00550at 115.998 kb on + strand, within AO353_00550at 116.046 kb on + strand, within AO353_00550at 116.047 kb on - strand, within AO353_00550at 116.058 kb on + strand, within AO353_00550at 116.059 kb on - strand, within AO353_00550at 116.152 kb on - strand, within AO353_00550at 116.178 kb on + strand, within AO353_00550at 116.178 kb on + strand, within AO353_00550at 116.179 kb on - strand, within AO353_00550at 116.179 kb on - strand, within AO353_00550at 116.179 kb on - strand, within AO353_00550at 116.179 kb on - strand, within AO353_00550at 116.335 kb on - strandat 116.335 kb on - strandat 116.743 kb on + strandat 116.743 kb on + strandat 116.743 kb on + strandat 116.744 kb on - strandat 116.744 kb on - strandat 116.744 kb on - strandat 116.858 kb on + strandat 116.858 kb on + strandat 116.859 kb on - strandat 116.859 kb on - strandat 116.904 kb on + strandat 116.904 kb on + strandat 116.905 kb on - strandat 116.905 kb on - strandat 116.905 kb on - strandat 116.992 kb on - strand, within AO353_00560at 116.992 kb on - strand, within AO353_00560at 116.992 kb on - strand, within AO353_00560at 117.139 kb on + strand, within AO353_00560at 117.139 kb on + strand, within AO353_00560at 117.140 kb on - strand, within AO353_00560at 117.140 kb on - strand, within AO353_00560at 117.140 kb on - strand, within AO353_00560at 117.403 kb on + strand, within AO353_00560at 117.427 kb on + strand, within AO353_00560at 117.427 kb on + strand, within AO353_00560at 117.427 kb on + strand, within AO353_00560at 117.428 kb on - strand, within AO353_00560at 117.428 kb on - strand, within AO353_00560at 117.428 kb on - strand, within AO353_00560at 117.592 kb on + strand, within AO353_00560at 117.611 kb on + strand, within AO353_00560at 117.612 kb on - strand, within AO353_00560at 117.612 kb on - strand, within AO353_00560at 117.817 kb on - strandat 117.895 kb on + strandat 117.895 kb on + strandat 117.895 kb on + strandat 117.896 kb on - strandat 117.896 kb on - strandat 117.896 kb on - strandat 117.914 kb on + strandat 117.914 kb on + strandat 117.914 kb on + strandat 117.914 kb on + strandat 117.915 kb on - strandat 118.003 kb on + strandat 118.047 kb on + strandat 118.047 kb on + strandat 118.048 kb on - strandat 118.048 kb on - strandat 118.053 kb on + strandat 118.053 kb on + strandat 118.053 kb on + strandat 118.054 kb on - strandat 118.054 kb on - strandat 118.054 kb on - strandat 118.070 kb on + strandat 118.070 kb on + strandat 118.071 kb on - strandat 118.075 kb on + strandat 118.076 kb on - strandat 118.162 kb on + strandat 118.162 kb on + strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.176 kb on + strandat 118.177 kb on - strandat 118.190 kb on + strandat 118.191 kb on - strandat 118.191 kb on - strandat 118.191 kb on - strandat 118.191 kb on - strandat 118.191 kb on - strandat 118.196 kb on + strandat 118.196 kb on + strandat 118.196 kb on + strandat 118.197 kb on - strandat 118.197 kb on - strandat 118.197 kb on - strandat 118.197 kb on - strandat 118.588 kb on + strand, within AO353_00565at 118.589 kb on - strand, within AO353_00565at 118.589 kb on - strand, within AO353_00565at 118.602 kb on - strand, within AO353_00565at 118.602 kb on - strand, within AO353_00565at 118.691 kb on + strand, within AO353_00565at 118.691 kb on + strand, within AO353_00565at 118.691 kb on + strand, within AO353_00565at 118.691 kb on + strand, within AO353_00565at 118.691 kb on + strand, within AO353_00565at 118.692 kb on - strand, within AO353_00565at 118.692 kb on - strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.736 kb on + strand, within AO353_00565at 118.737 kb on - strand, within AO353_00565at 118.737 kb on - strand, within AO353_00565at 118.737 kb on - strand, within AO353_00565at 118.737 kb on - strand, within AO353_00565at 118.737 kb on - strand, within AO353_00565at 118.737 kb on - strand, within AO353_00565at 118.737 kb on - strand, within AO353_00565at 118.737 kb on - strand, within AO353_00565at 118.800 kb on + strand, within AO353_00565at 118.801 kb on - strand, within AO353_00565at 118.801 kb on - strand, within AO353_00565

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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115,876 + AO353_00550 0.67 +2.7
115,877 - AO353_00550 0.67 -0.9
115,998 + AO353_00550 0.76 +0.9
115,998 + AO353_00550 0.76 +0.9
116,046 + AO353_00550 0.79 +0.5
116,047 - AO353_00550 0.79 -0.1
116,058 + AO353_00550 0.80 -0.5
116,059 - AO353_00550 0.80 +2.6
116,152 - AO353_00550 0.87 +0.3
116,178 + AO353_00550 0.89 +0.5
116,178 + AO353_00550 0.89 +0.9
116,179 - AO353_00550 0.89 +1.5
116,179 - AO353_00550 0.89 +0.3
116,179 - AO353_00550 0.89 +0.5
116,179 - AO353_00550 0.89 -0.1
116,335 - -1.5
116,335 - +1.5
116,743 + +0.5
116,743 + +0.4
116,743 + +0.5
116,744 - -0.5
116,744 - -0.1
116,744 - +0.9
116,858 + +0.9
116,858 + +1.1
116,859 - +0.5
116,859 - -2.3
116,904 + +1.6
116,904 + +0.5
116,905 - +1.5
116,905 - -0.5
116,905 - -0.5
116,992 - AO353_00560 0.14 +0.9
116,992 - AO353_00560 0.14 +0.1
116,992 - AO353_00560 0.14 -0.1
117,139 + AO353_00560 0.28 +0.9
117,139 + AO353_00560 0.28 +0.1
117,140 - AO353_00560 0.28 +0.5
117,140 - AO353_00560 0.28 -0.5
117,140 - AO353_00560 0.28 -1.1
117,403 + AO353_00560 0.53 -0.1
117,427 + AO353_00560 0.55 +0.5
117,427 + AO353_00560 0.55 +1.5
117,427 + AO353_00560 0.55 +1.2
117,428 - AO353_00560 0.55 +6.8
117,428 - AO353_00560 0.55 +0.6
117,428 - AO353_00560 0.55 -0.9
117,592 + AO353_00560 0.70 -1.5
117,611 + AO353_00560 0.72 -2.7
117,612 - AO353_00560 0.72 -0.8
117,612 - AO353_00560 0.72 +0.5
117,817 - +1.5
117,895 + +0.7
117,895 + +1.0
117,895 + +0.5
117,896 - +0.3
117,896 - +0.5
117,896 - +0.6
117,914 + -2.1
117,914 + -0.1
117,914 + +1.1
117,914 + -0.1
117,915 - +3.0
118,003 + +2.2
118,047 + -1.7
118,047 + -0.5
118,048 - +0.5
118,048 - -0.1
118,053 + +0.9
118,053 + -2.1
118,053 + +1.2
118,054 - +1.6
118,054 - +0.3
118,054 - -0.4
118,070 + -0.1
118,070 + -0.1
118,071 - -0.1
118,075 + +1.5
118,076 - +0.5
118,162 + -1.1
118,162 + +0.6
118,163 - -1.1
118,163 - +2.2
118,163 - -1.1
118,176 + +1.1
118,177 - -1.1
118,190 + -0.1
118,191 - +0.1
118,191 - +0.9
118,191 - -0.1
118,191 - +1.1
118,191 - +1.9
118,196 + -1.1
118,196 + -1.7
118,196 + -1.5
118,197 - +2.5
118,197 - +0.1
118,197 - +0.1
118,197 - +0.9
118,588 + AO353_00565 0.17 +1.2
118,589 - AO353_00565 0.17 +0.0
118,589 - AO353_00565 0.17 -0.1
118,602 - AO353_00565 0.17 -1.1
118,602 - AO353_00565 0.17 +0.6
118,691 + AO353_00565 0.20 -0.1
118,691 + AO353_00565 0.20 -2.1
118,691 + AO353_00565 0.20 -0.3
118,691 + AO353_00565 0.20 -0.1
118,691 + AO353_00565 0.20 +0.5
118,692 - AO353_00565 0.20 -0.5
118,692 - AO353_00565 0.20 -0.9
118,736 + AO353_00565 0.22 -0.0
118,736 + AO353_00565 0.22 +0.9
118,736 + AO353_00565 0.22 -0.9
118,736 + AO353_00565 0.22 -0.1
118,736 + AO353_00565 0.22 +0.3
118,736 + AO353_00565 0.22 -1.1
118,736 + AO353_00565 0.22 +3.2
118,736 + AO353_00565 0.22 -0.1
118,736 + AO353_00565 0.22 -1.1
118,736 + AO353_00565 0.22 -0.7
118,736 + AO353_00565 0.22 -0.7
118,736 + AO353_00565 0.22 -0.1
118,736 + AO353_00565 0.22 +2.5
118,736 + AO353_00565 0.22 -1.4
118,737 - AO353_00565 0.22 +0.3
118,737 - AO353_00565 0.22 +1.9
118,737 - AO353_00565 0.22 +1.5
118,737 - AO353_00565 0.22 +0.1
118,737 - AO353_00565 0.22 +0.5
118,737 - AO353_00565 0.22 +0.4
118,737 - AO353_00565 0.22 -0.1
118,737 - AO353_00565 0.22 -0.8
118,800 + AO353_00565 0.24 -0.1
118,801 - AO353_00565 0.24 -1.1
118,801 - AO353_00565 0.24 -0.1

Or see this region's nucleotide sequence