Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00020

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00015 and AO353_00020 are separated by 19 nucleotidesAO353_00020 and AO353_00025 are separated by 163 nucleotides AO353_00015: AO353_00015 - FAD-dependent oxidoreductase, at 2,319 to 3,848 _00015 AO353_00020: AO353_00020 - delta-aminolevulinic acid dehydratase, at 3,868 to 4,842 _00020 AO353_00025: AO353_00025 - phenazine biosynthesis protein PhzF, at 5,006 to 5,848 _00025 Position (kb) 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2.877 kb on + strand, within AO353_00015at 2.877 kb on + strand, within AO353_00015at 2.877 kb on + strand, within AO353_00015at 2.877 kb on + strand, within AO353_00015at 2.877 kb on + strand, within AO353_00015at 2.878 kb on - strand, within AO353_00015at 2.878 kb on - strand, within AO353_00015at 2.878 kb on - strand, within AO353_00015at 2.878 kb on - strand, within AO353_00015at 3.088 kb on + strand, within AO353_00015at 3.088 kb on + strand, within AO353_00015at 3.089 kb on - strand, within AO353_00015at 3.114 kb on + strand, within AO353_00015at 3.114 kb on + strand, within AO353_00015at 3.114 kb on + strand, within AO353_00015at 3.303 kb on + strand, within AO353_00015at 3.303 kb on + strand, within AO353_00015at 3.304 kb on - strand, within AO353_00015at 3.304 kb on - strand, within AO353_00015at 3.304 kb on - strand, within AO353_00015at 3.304 kb on - strand, within AO353_00015at 3.304 kb on - strand, within AO353_00015at 3.462 kb on + strand, within AO353_00015at 3.463 kb on - strand, within AO353_00015at 3.463 kb on - strand, within AO353_00015at 3.499 kb on - strand, within AO353_00015at 3.625 kb on + strand, within AO353_00015at 3.625 kb on + strand, within AO353_00015at 3.625 kb on + strand, within AO353_00015at 3.626 kb on - strand, within AO353_00015at 3.626 kb on - strand, within AO353_00015at 3.626 kb on - strand, within AO353_00015at 3.626 kb on - strand, within AO353_00015at 3.626 kb on - strand, within AO353_00015at 3.627 kb on + strand, within AO353_00015at 3.627 kb on + strand, within AO353_00015at 3.628 kb on - strand, within AO353_00015at 3.741 kb on + strandat 3.741 kb on + strandat 3.741 kb on + strandat 3.741 kb on + strandat 3.741 kb on + strandat 3.741 kb on + strandat 3.742 kb on - strandat 3.742 kb on - strandat 3.742 kb on - strandat 3.742 kb on - strandat 3.745 kb on + strandat 3.745 kb on + strandat 3.745 kb on + strandat 3.745 kb on + strandat 3.745 kb on + strandat 3.745 kb on + strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.746 kb on - strandat 3.748 kb on + strandat 3.762 kb on + strandat 3.762 kb on + strandat 3.762 kb on + strandat 3.762 kb on + strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.763 kb on - strandat 3.810 kb on + strandat 3.811 kb on - strandat 3.811 kb on - strandat 3.869 kb on + strandat 3.869 kb on + strandat 3.869 kb on + strandat 3.870 kb on - strandat 3.902 kb on + strandat 3.903 kb on - strandat 3.903 kb on - strandat 4.028 kb on + strand, within AO353_00020at 4.028 kb on + strand, within AO353_00020at 4.029 kb on - strand, within AO353_00020at 4.082 kb on + strand, within AO353_00020at 4.082 kb on + strand, within AO353_00020at 4.082 kb on + strand, within AO353_00020at 4.082 kb on + strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.188 kb on + strand, within AO353_00020at 4.188 kb on + strand, within AO353_00020at 4.235 kb on + strand, within AO353_00020at 4.235 kb on + strand, within AO353_00020at 4.236 kb on - strand, within AO353_00020at 4.236 kb on - strand, within AO353_00020at 4.262 kb on + strand, within AO353_00020at 4.466 kb on + strand, within AO353_00020at 4.467 kb on - strand, within AO353_00020at 4.467 kb on - strand, within AO353_00020at 4.534 kb on - strand, within AO353_00020at 4.534 kb on - strand, within AO353_00020at 4.634 kb on + strand, within AO353_00020at 4.634 kb on + strand, within AO353_00020at 4.634 kb on + strand, within AO353_00020at 4.635 kb on - strand, within AO353_00020at 4.635 kb on - strand, within AO353_00020at 4.889 kb on + strandat 4.889 kb on + strandat 4.890 kb on - strandat 4.904 kb on + strandat 4.904 kb on + strandat 4.904 kb on + strandat 4.905 kb on - strandat 4.905 kb on - strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.934 kb on - strandat 4.934 kb on - strandat 4.950 kb on + strandat 4.951 kb on - strandat 5.007 kb on + strandat 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.223 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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2,877 + AO353_00015 0.36 +1.9
2,877 + AO353_00015 0.36 +0.5
2,877 + AO353_00015 0.36 +1.9
2,877 + AO353_00015 0.36 -0.1
2,877 + AO353_00015 0.36 +0.9
2,878 - AO353_00015 0.37 -0.1
2,878 - AO353_00015 0.37 +1.2
2,878 - AO353_00015 0.37 -0.1
2,878 - AO353_00015 0.37 -1.5
3,088 + AO353_00015 0.50 +1.5
3,088 + AO353_00015 0.50 +0.3
3,089 - AO353_00015 0.50 +1.0
3,114 + AO353_00015 0.52 -0.5
3,114 + AO353_00015 0.52 -1.1
3,114 + AO353_00015 0.52 +1.9
3,303 + AO353_00015 0.64 -0.1
3,303 + AO353_00015 0.64 -1.1
3,304 - AO353_00015 0.64 -2.9
3,304 - AO353_00015 0.64 +0.9
3,304 - AO353_00015 0.64 +2.9
3,304 - AO353_00015 0.64 -1.1
3,304 - AO353_00015 0.64 -0.1
3,462 + AO353_00015 0.75 +0.9
3,463 - AO353_00015 0.75 +1.5
3,463 - AO353_00015 0.75 +1.5
3,499 - AO353_00015 0.77 +0.6
3,625 + AO353_00015 0.85 -0.1
3,625 + AO353_00015 0.85 +0.3
3,625 + AO353_00015 0.85 +1.9
3,626 - AO353_00015 0.85 +1.1
3,626 - AO353_00015 0.85 -0.1
3,626 - AO353_00015 0.85 +1.7
3,626 - AO353_00015 0.85 -1.7
3,626 - AO353_00015 0.85 +0.1
3,627 + AO353_00015 0.85 +1.5
3,627 + AO353_00015 0.85 +0.5
3,628 - AO353_00015 0.86 +1.1
3,741 + -1.1
3,741 + +0.3
3,741 + +0.1
3,741 + +0.9
3,741 + +0.2
3,741 + -0.5
3,742 - -1.1
3,742 - -1.5
3,742 - +1.3
3,742 - +1.5
3,745 + -1.7
3,745 + -0.8
3,745 + +1.9
3,745 + -0.1
3,745 + +1.3
3,745 + +0.5
3,746 - +1.5
3,746 - -0.1
3,746 - +1.9
3,746 - +0.7
3,746 - -1.7
3,746 - +0.9
3,746 - -0.1
3,746 - -0.1
3,746 - +1.1
3,746 - -0.9
3,746 - -0.6
3,746 - -0.7
3,748 + -0.1
3,762 + -0.1
3,762 + +2.2
3,762 + +0.0
3,762 + -1.5
3,763 - -2.5
3,763 - +0.2
3,763 - -0.2
3,763 - -0.1
3,763 - -0.1
3,763 - +0.5
3,763 - +0.6
3,763 - -0.1
3,763 - -0.5
3,763 - -0.1
3,763 - +0.1
3,763 - -0.5
3,810 + +1.5
3,811 - +0.9
3,811 - -0.6
3,869 + +0.5
3,869 + +0.2
3,869 + -0.1
3,870 - +1.3
3,902 + +1.5
3,903 - -1.1
3,903 - +1.5
4,028 + AO353_00020 0.16 +0.9
4,028 + AO353_00020 0.16 -0.1
4,029 - AO353_00020 0.17 +0.9
4,082 + AO353_00020 0.22 +0.9
4,082 + AO353_00020 0.22 +0.4
4,082 + AO353_00020 0.22 +3.2
4,082 + AO353_00020 0.22 -1.7
4,083 - AO353_00020 0.22 +0.9
4,083 - AO353_00020 0.22 +0.7
4,083 - AO353_00020 0.22 -1.1
4,083 - AO353_00020 0.22 +1.9
4,083 - AO353_00020 0.22 +0.7
4,083 - AO353_00020 0.22 +1.5
4,188 + AO353_00020 0.33 +2.5
4,188 + AO353_00020 0.33 +0.4
4,235 + AO353_00020 0.38 -0.1
4,235 + AO353_00020 0.38 -0.7
4,236 - AO353_00020 0.38 +0.7
4,236 - AO353_00020 0.38 -0.1
4,262 + AO353_00020 0.40 +0.9
4,466 + AO353_00020 0.61 +0.9
4,467 - AO353_00020 0.61 -0.1
4,467 - AO353_00020 0.61 +1.0
4,534 - AO353_00020 0.68 -0.1
4,534 - AO353_00020 0.68 +0.9
4,634 + AO353_00020 0.79 +2.2
4,634 + AO353_00020 0.79 +0.9
4,634 + AO353_00020 0.79 +1.5
4,635 - AO353_00020 0.79 -0.1
4,635 - AO353_00020 0.79 -1.1
4,889 + -0.5
4,889 + +0.5
4,890 - -1.5
4,904 + +0.5
4,904 + +1.2
4,904 + +0.9
4,905 - +0.2
4,905 - +0.9
4,933 + +0.4
4,933 + +1.5
4,933 + -0.3
4,934 - -0.9
4,934 - -0.7
4,950 + -0.7
4,951 - -0.8
5,007 + +0.5
5,127 + AO353_00025 0.14 +1.2
5,127 + AO353_00025 0.14 +0.5
5,127 + AO353_00025 0.14 +1.9
5,127 + AO353_00025 0.14 +0.1
5,128 - AO353_00025 0.14 -1.1
5,128 - AO353_00025 0.14 -1.1
5,128 - AO353_00025 0.14 -0.3
5,128 - AO353_00025 0.14 +0.5
5,223 - AO353_00025 0.26 -0.1
5,405 - AO353_00025 0.47 +0.2
5,405 - AO353_00025 0.47 -1.1
5,405 - AO353_00025 0.47 -0.8

Or see this region's nucleotide sequence