Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21180

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21170 and ABZR86_RS21175 are separated by 80 nucleotidesABZR86_RS21175 and ABZR86_RS21180 are separated by 158 nucleotidesABZR86_RS21180 and ABZR86_RS21185 are separated by 118 nucleotidesABZR86_RS21185 and ABZR86_RS21190 are separated by 40 nucleotides ABZR86_RS21170: ABZR86_RS21170 - copper resistance system multicopper oxidase, at 201,250 to 202,959 _RS21170 ABZR86_RS21175: ABZR86_RS21175 - hypothetical protein, at 203,040 to 203,417 _RS21175 ABZR86_RS21180: ABZR86_RS21180 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 203,576 to 204,451 _RS21180 ABZR86_RS21185: ABZR86_RS21185 - Slp family lipoprotein, at 204,570 to 205,082 _RS21185 ABZR86_RS21190: ABZR86_RS21190 - cation diffusion facilitator family transporter, at 205,123 to 206,031 _RS21190 Position (kb) 203 204 205Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 202.947 kb on - strandat 202.947 kb on - strandat 203.417 kb on + strandat 203.417 kb on + strandat 203.417 kb on + strandat 203.418 kb on - strandat 203.418 kb on - strandat 203.418 kb on - strandat 203.564 kb on + strandat 203.564 kb on + strandat 203.565 kb on - strandat 203.565 kb on - strandat 203.582 kb on + strandat 203.582 kb on + strandat 203.594 kb on + strandat 203.595 kb on - strandat 203.714 kb on + strand, within ABZR86_RS21180at 203.715 kb on - strand, within ABZR86_RS21180at 203.753 kb on + strand, within ABZR86_RS21180at 204.032 kb on + strand, within ABZR86_RS21180at 204.033 kb on - strand, within ABZR86_RS21180at 204.098 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.176 kb on + strand, within ABZR86_RS21180at 204.177 kb on - strand, within ABZR86_RS21180at 204.177 kb on - strand, within ABZR86_RS21180at 204.177 kb on - strand, within ABZR86_RS21180at 204.177 kb on - strand, within ABZR86_RS21180at 204.177 kb on - strand, within ABZR86_RS21180at 204.177 kb on - strand, within ABZR86_RS21180at 204.481 kb on + strandat 204.481 kb on + strandat 204.657 kb on + strand, within ABZR86_RS21185at 204.657 kb on + strand, within ABZR86_RS21185at 204.657 kb on + strand, within ABZR86_RS21185at 204.658 kb on - strand, within ABZR86_RS21185at 204.658 kb on - strand, within ABZR86_RS21185at 204.665 kb on + strand, within ABZR86_RS21185at 204.666 kb on - strand, within ABZR86_RS21185at 204.717 kb on + strand, within ABZR86_RS21185at 204.717 kb on + strand, within ABZR86_RS21185at 204.718 kb on - strand, within ABZR86_RS21185at 204.718 kb on - strand, within ABZR86_RS21185at 204.876 kb on + strand, within ABZR86_RS21185at 204.877 kb on - strand, within ABZR86_RS21185at 204.894 kb on + strand, within ABZR86_RS21185at 204.895 kb on - strand, within ABZR86_RS21185at 204.970 kb on - strand, within ABZR86_RS21185at 204.973 kb on + strand, within ABZR86_RS21185at 204.973 kb on + strand, within ABZR86_RS21185at 204.973 kb on + strand, within ABZR86_RS21185at 204.973 kb on + strand, within ABZR86_RS21185at 204.974 kb on - strand, within ABZR86_RS21185at 204.974 kb on - strand, within ABZR86_RS21185at 204.974 kb on - strand, within ABZR86_RS21185at 205.013 kb on + strand, within ABZR86_RS21185at 205.014 kb on - strand, within ABZR86_RS21185at 205.091 kb on + strandat 205.091 kb on + strandat 205.098 kb on + strandat 205.098 kb on + strandat 205.099 kb on - strandat 205.355 kb on - strand, within ABZR86_RS21190at 205.414 kb on + strand, within ABZR86_RS21190at 205.414 kb on + strand, within ABZR86_RS21190at 205.414 kb on + strand, within ABZR86_RS21190at 205.414 kb on + strand, within ABZR86_RS21190at 205.414 kb on + strand, within ABZR86_RS21190at 205.414 kb on + strand, within ABZR86_RS21190at 205.414 kb on + strand, within ABZR86_RS21190at 205.414 kb on + strand, within ABZR86_RS21190at 205.415 kb on - strand, within ABZR86_RS21190at 205.415 kb on - strand, within ABZR86_RS21190at 205.415 kb on - strand, within ABZR86_RS21190

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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202,947 - +0.1
202,947 - +0.6
203,417 + +0.9
203,417 + +0.3
203,417 + +0.1
203,418 - -0.5
203,418 - +0.0
203,418 - -0.2
203,564 + -0.5
203,564 + -0.5
203,565 - -0.0
203,565 - -0.6
203,582 + +1.1
203,582 + -0.8
203,594 + +0.6
203,595 - -0.9
203,714 + ABZR86_RS21180 0.16 -1.1
203,715 - ABZR86_RS21180 0.16 -0.4
203,753 + ABZR86_RS21180 0.20 -0.8
204,032 + ABZR86_RS21180 0.52 +0.1
204,033 - ABZR86_RS21180 0.52 -0.3
204,098 + ABZR86_RS21180 0.60 +0.3
204,176 + ABZR86_RS21180 0.68 -0.3
204,176 + ABZR86_RS21180 0.68 +3.0
204,176 + ABZR86_RS21180 0.68 -0.3
204,176 + ABZR86_RS21180 0.68 +0.1
204,176 + ABZR86_RS21180 0.68 +0.4
204,176 + ABZR86_RS21180 0.68 -0.3
204,176 + ABZR86_RS21180 0.68 +0.6
204,176 + ABZR86_RS21180 0.68 -0.7
204,176 + ABZR86_RS21180 0.68 -0.2
204,176 + ABZR86_RS21180 0.68 -0.9
204,177 - ABZR86_RS21180 0.69 -0.7
204,177 - ABZR86_RS21180 0.69 -0.1
204,177 - ABZR86_RS21180 0.69 +0.0
204,177 - ABZR86_RS21180 0.69 +0.1
204,177 - ABZR86_RS21180 0.69 +1.1
204,177 - ABZR86_RS21180 0.69 -0.9
204,481 + +0.2
204,481 + +0.1
204,657 + ABZR86_RS21185 0.17 +0.4
204,657 + ABZR86_RS21185 0.17 +0.7
204,657 + ABZR86_RS21185 0.17 +0.1
204,658 - ABZR86_RS21185 0.17 -0.1
204,658 - ABZR86_RS21185 0.17 -0.3
204,665 + ABZR86_RS21185 0.19 +0.2
204,666 - ABZR86_RS21185 0.19 +0.3
204,717 + ABZR86_RS21185 0.29 +0.1
204,717 + ABZR86_RS21185 0.29 +0.4
204,718 - ABZR86_RS21185 0.29 -0.0
204,718 - ABZR86_RS21185 0.29 -0.5
204,876 + ABZR86_RS21185 0.60 -0.8
204,877 - ABZR86_RS21185 0.60 +0.2
204,894 + ABZR86_RS21185 0.63 -0.6
204,895 - ABZR86_RS21185 0.63 +0.0
204,970 - ABZR86_RS21185 0.78 -0.0
204,973 + ABZR86_RS21185 0.79 -0.4
204,973 + ABZR86_RS21185 0.79 -0.4
204,973 + ABZR86_RS21185 0.79 +1.2
204,973 + ABZR86_RS21185 0.79 -1.2
204,974 - ABZR86_RS21185 0.79 +0.7
204,974 - ABZR86_RS21185 0.79 -0.4
204,974 - ABZR86_RS21185 0.79 +0.2
205,013 + ABZR86_RS21185 0.86 -0.0
205,014 - ABZR86_RS21185 0.87 +2.0
205,091 + +0.0
205,091 + -0.2
205,098 + -0.3
205,098 + -0.0
205,099 - +0.1
205,355 - ABZR86_RS21190 0.26 -4.2
205,414 + ABZR86_RS21190 0.32 -0.9
205,414 + ABZR86_RS21190 0.32 +0.4
205,414 + ABZR86_RS21190 0.32 +0.6
205,414 + ABZR86_RS21190 0.32 -0.5
205,414 + ABZR86_RS21190 0.32 +0.4
205,414 + ABZR86_RS21190 0.32 +0.2
205,414 + ABZR86_RS21190 0.32 -0.6
205,414 + ABZR86_RS21190 0.32 -1.0
205,415 - ABZR86_RS21190 0.32 -0.6
205,415 - ABZR86_RS21190 0.32 -0.2
205,415 - ABZR86_RS21190 0.32 +0.1

Or see this region's nucleotide sequence