Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11425

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11420 and ABZR86_RS11425 are separated by 227 nucleotidesABZR86_RS11425 and ABZR86_RS11430 overlap by 8 nucleotidesABZR86_RS11430 and ABZR86_RS11435 are separated by 67 nucleotides ABZR86_RS11420: ABZR86_RS11420 - lytic transglycosylase domain-containing protein, at 2,549,549 to 2,550,586 _RS11420 ABZR86_RS11425: ABZR86_RS11425 - TrbC/VirB2 family protein, at 2,550,814 to 2,551,155 _RS11425 ABZR86_RS11430: ABZR86_RS11430 - VirB3 family type IV secretion system protein, at 2,551,148 to 2,551,453 _RS11430 ABZR86_RS11435: ABZR86_RS11435 - VirB4 family type IV secretion/conjugal transfer ATPase, at 2,551,521 to 2,553,995 _RS11435 Position (kb) 2550 2551 2552Strain fitness (log2 ratio) -1 0 1at 2549.867 kb on + strand, within ABZR86_RS11420at 2549.867 kb on + strand, within ABZR86_RS11420at 2549.867 kb on + strand, within ABZR86_RS11420at 2549.867 kb on + strand, within ABZR86_RS11420at 2549.912 kb on + strand, within ABZR86_RS11420at 2549.912 kb on + strand, within ABZR86_RS11420at 2549.912 kb on + strand, within ABZR86_RS11420at 2549.913 kb on - strand, within ABZR86_RS11420at 2549.949 kb on - strand, within ABZR86_RS11420at 2550.107 kb on + strand, within ABZR86_RS11420at 2550.706 kb on + strandat 2550.706 kb on + strandat 2550.707 kb on - strandat 2551.147 kb on + strandat 2551.147 kb on + strandat 2551.147 kb on + strandat 2551.147 kb on + strandat 2551.148 kb on - strandat 2551.148 kb on - strandat 2551.153 kb on + strandat 2551.153 kb on + strandat 2551.153 kb on + strandat 2551.154 kb on - strandat 2551.154 kb on - strandat 2551.208 kb on + strand, within ABZR86_RS11430at 2551.209 kb on - strand, within ABZR86_RS11430at 2551.209 kb on - strand, within ABZR86_RS11430at 2551.257 kb on - strand, within ABZR86_RS11430at 2551.257 kb on - strand, within ABZR86_RS11430at 2551.257 kb on - strand, within ABZR86_RS11430at 2551.451 kb on + strandat 2551.451 kb on + strandat 2551.451 kb on + strandat 2551.573 kb on + strandat 2551.573 kb on + strandat 2551.824 kb on + strand, within ABZR86_RS11435at 2551.825 kb on - strand, within ABZR86_RS11435at 2551.825 kb on - strand, within ABZR86_RS11435at 2551.828 kb on - strand, within ABZR86_RS11435at 2551.828 kb on - strand, within ABZR86_RS11435at 2551.828 kb on - strand, within ABZR86_RS11435at 2551.828 kb on - strand, within ABZR86_RS11435at 2551.869 kb on + strand, within ABZR86_RS11435at 2551.869 kb on + strand, within ABZR86_RS11435at 2551.869 kb on + strand, within ABZR86_RS11435at 2551.885 kb on - strand, within ABZR86_RS11435at 2551.885 kb on - strand, within ABZR86_RS11435at 2552.016 kb on + strand, within ABZR86_RS11435at 2552.016 kb on + strand, within ABZR86_RS11435at 2552.040 kb on + strand, within ABZR86_RS11435at 2552.040 kb on + strand, within ABZR86_RS11435at 2552.041 kb on - strand, within ABZR86_RS11435at 2552.041 kb on - strand, within ABZR86_RS11435at 2552.041 kb on - strand, within ABZR86_RS11435at 2552.041 kb on - strand, within ABZR86_RS11435at 2552.041 kb on - strand, within ABZR86_RS11435at 2552.143 kb on - strand, within ABZR86_RS11435at 2552.148 kb on + strand, within ABZR86_RS11435

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,549,867 + ABZR86_RS11420 0.31 -1.3
2,549,867 + ABZR86_RS11420 0.31 -0.2
2,549,867 + ABZR86_RS11420 0.31 +0.3
2,549,867 + ABZR86_RS11420 0.31 -0.6
2,549,912 + ABZR86_RS11420 0.35 +0.1
2,549,912 + ABZR86_RS11420 0.35 +1.5
2,549,912 + ABZR86_RS11420 0.35 -0.1
2,549,913 - ABZR86_RS11420 0.35 +0.1
2,549,949 - ABZR86_RS11420 0.39 -0.1
2,550,107 + ABZR86_RS11420 0.54 +0.2
2,550,706 + +0.4
2,550,706 + +0.8
2,550,707 - -1.2
2,551,147 + -0.5
2,551,147 + -0.1
2,551,147 + +0.1
2,551,147 + +0.2
2,551,148 - -0.2
2,551,148 - -0.4
2,551,153 + -0.1
2,551,153 + -0.1
2,551,153 + -0.7
2,551,154 - +0.7
2,551,154 - -1.2
2,551,208 + ABZR86_RS11430 0.20 +0.5
2,551,209 - ABZR86_RS11430 0.20 -0.1
2,551,209 - ABZR86_RS11430 0.20 -0.0
2,551,257 - ABZR86_RS11430 0.36 -0.2
2,551,257 - ABZR86_RS11430 0.36 -0.1
2,551,257 - ABZR86_RS11430 0.36 +0.6
2,551,451 + +0.8
2,551,451 + +0.1
2,551,451 + +0.5
2,551,573 + +0.2
2,551,573 + -1.5
2,551,824 + ABZR86_RS11435 0.12 -0.7
2,551,825 - ABZR86_RS11435 0.12 +1.2
2,551,825 - ABZR86_RS11435 0.12 +0.2
2,551,828 - ABZR86_RS11435 0.12 -0.8
2,551,828 - ABZR86_RS11435 0.12 +0.0
2,551,828 - ABZR86_RS11435 0.12 +0.3
2,551,828 - ABZR86_RS11435 0.12 -1.0
2,551,869 + ABZR86_RS11435 0.14 +0.7
2,551,869 + ABZR86_RS11435 0.14 -0.0
2,551,869 + ABZR86_RS11435 0.14 -0.0
2,551,885 - ABZR86_RS11435 0.15 +1.2
2,551,885 - ABZR86_RS11435 0.15 -1.0
2,552,016 + ABZR86_RS11435 0.20 -1.4
2,552,016 + ABZR86_RS11435 0.20 +0.4
2,552,040 + ABZR86_RS11435 0.21 -0.2
2,552,040 + ABZR86_RS11435 0.21 +0.6
2,552,041 - ABZR86_RS11435 0.21 +0.6
2,552,041 - ABZR86_RS11435 0.21 -1.6
2,552,041 - ABZR86_RS11435 0.21 +1.0
2,552,041 - ABZR86_RS11435 0.21 +0.0
2,552,041 - ABZR86_RS11435 0.21 -0.6
2,552,143 - ABZR86_RS11435 0.25 +0.0
2,552,148 + ABZR86_RS11435 0.25 -0.3

Or see this region's nucleotide sequence