Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09440

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09430 and ABZR86_RS09435 are separated by 8 nucleotidesABZR86_RS09435 and ABZR86_RS09440 are separated by 58 nucleotidesABZR86_RS09440 and ABZR86_RS09445 are separated by 73 nucleotidesABZR86_RS09445 and ABZR86_RS09450 are separated by 178 nucleotides ABZR86_RS09430: ABZR86_RS09430 - non-heme iron oxygenase ferredoxin subunit, at 2,100,672 to 2,100,995 _RS09430 ABZR86_RS09435: ABZR86_RS09435 - N-acetyltransferase, at 2,101,004 to 2,101,552 _RS09435 ABZR86_RS09440: ABZR86_RS09440 - YncE family protein, at 2,101,611 to 2,102,615 _RS09440 ABZR86_RS09445: ABZR86_RS09445 - Fe-Mn family superoxide dismutase, at 2,102,689 to 2,103,267 _RS09445 ABZR86_RS09450: ABZR86_RS09450 - winged helix-turn-helix transcriptional regulator, at 2,103,446 to 2,104,117 _RS09450 Position (kb) 2101 2102 2103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2100.666 kb on + strandat 2100.666 kb on + strandat 2100.877 kb on + strand, within ABZR86_RS09430at 2100.878 kb on - strand, within ABZR86_RS09430at 2100.878 kb on - strand, within ABZR86_RS09430at 2100.878 kb on - strand, within ABZR86_RS09430at 2100.898 kb on + strand, within ABZR86_RS09430at 2100.898 kb on + strand, within ABZR86_RS09430at 2100.899 kb on - strand, within ABZR86_RS09430at 2100.899 kb on - strand, within ABZR86_RS09430at 2100.931 kb on + strand, within ABZR86_RS09430at 2100.979 kb on + strandat 2100.979 kb on + strandat 2100.980 kb on - strandat 2101.531 kb on + strandat 2101.532 kb on - strandat 2101.564 kb on + strandat 2101.564 kb on + strandat 2101.565 kb on - strandat 2101.565 kb on - strandat 2101.687 kb on + strandat 2101.687 kb on + strandat 2101.687 kb on + strandat 2101.688 kb on - strandat 2101.688 kb on - strandat 2101.846 kb on + strand, within ABZR86_RS09440at 2101.846 kb on + strand, within ABZR86_RS09440at 2101.847 kb on - strand, within ABZR86_RS09440at 2102.077 kb on + strand, within ABZR86_RS09440at 2102.077 kb on + strand, within ABZR86_RS09440at 2102.077 kb on + strand, within ABZR86_RS09440at 2102.078 kb on - strand, within ABZR86_RS09440at 2102.262 kb on - strand, within ABZR86_RS09440at 2102.262 kb on - strand, within ABZR86_RS09440at 2102.449 kb on + strand, within ABZR86_RS09440at 2102.450 kb on - strand, within ABZR86_RS09440at 2102.482 kb on + strand, within ABZR86_RS09440at 2102.483 kb on - strand, within ABZR86_RS09440at 2102.483 kb on - strand, within ABZR86_RS09440at 2102.531 kb on - strandat 2102.531 kb on - strandat 2102.658 kb on - strandat 2102.671 kb on + strandat 2102.747 kb on + strand, within ABZR86_RS09445at 2102.748 kb on - strand, within ABZR86_RS09445at 2102.748 kb on - strand, within ABZR86_RS09445at 2102.748 kb on - strand, within ABZR86_RS09445at 2102.748 kb on - strand, within ABZR86_RS09445at 2102.768 kb on + strand, within ABZR86_RS09445at 2102.769 kb on - strand, within ABZR86_RS09445at 2102.777 kb on + strand, within ABZR86_RS09445at 2102.777 kb on + strand, within ABZR86_RS09445at 2102.777 kb on + strand, within ABZR86_RS09445at 2102.777 kb on + strand, within ABZR86_RS09445at 2102.778 kb on - strand, within ABZR86_RS09445at 2102.778 kb on - strand, within ABZR86_RS09445at 2102.778 kb on - strand, within ABZR86_RS09445at 2102.781 kb on - strand, within ABZR86_RS09445at 2103.164 kb on + strand, within ABZR86_RS09445at 2103.164 kb on + strand, within ABZR86_RS09445at 2103.164 kb on + strand, within ABZR86_RS09445at 2103.164 kb on + strand, within ABZR86_RS09445at 2103.164 kb on + strand, within ABZR86_RS09445at 2103.165 kb on - strand, within ABZR86_RS09445at 2103.191 kb on + strand, within ABZR86_RS09445at 2103.192 kb on - strand, within ABZR86_RS09445at 2103.239 kb on + strandat 2103.240 kb on - strandat 2103.271 kb on + strandat 2103.303 kb on + strandat 2103.303 kb on + strandat 2103.303 kb on + strandat 2103.303 kb on + strandat 2103.303 kb on + strandat 2103.303 kb on + strandat 2103.303 kb on + strandat 2103.304 kb on - strandat 2103.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,100,666 + -0.5
2,100,666 + -0.7
2,100,877 + ABZR86_RS09430 0.63 -1.6
2,100,878 - ABZR86_RS09430 0.64 -1.8
2,100,878 - ABZR86_RS09430 0.64 -0.2
2,100,878 - ABZR86_RS09430 0.64 -0.5
2,100,898 + ABZR86_RS09430 0.70 -1.4
2,100,898 + ABZR86_RS09430 0.70 -0.2
2,100,899 - ABZR86_RS09430 0.70 -2.7
2,100,899 - ABZR86_RS09430 0.70 -0.8
2,100,931 + ABZR86_RS09430 0.80 -2.3
2,100,979 + -1.5
2,100,979 + -1.7
2,100,980 - -1.4
2,101,531 + -0.5
2,101,532 - +0.1
2,101,564 + -0.3
2,101,564 + +0.5
2,101,565 - +3.1
2,101,565 - -0.3
2,101,687 + +0.1
2,101,687 + +0.2
2,101,687 + +0.8
2,101,688 - -0.5
2,101,688 - +0.4
2,101,846 + ABZR86_RS09440 0.23 +0.3
2,101,846 + ABZR86_RS09440 0.23 -0.2
2,101,847 - ABZR86_RS09440 0.23 +1.3
2,102,077 + ABZR86_RS09440 0.46 +0.1
2,102,077 + ABZR86_RS09440 0.46 +0.1
2,102,077 + ABZR86_RS09440 0.46 +0.2
2,102,078 - ABZR86_RS09440 0.46 +2.1
2,102,262 - ABZR86_RS09440 0.65 +1.1
2,102,262 - ABZR86_RS09440 0.65 +0.9
2,102,449 + ABZR86_RS09440 0.83 +0.4
2,102,450 - ABZR86_RS09440 0.83 -0.4
2,102,482 + ABZR86_RS09440 0.87 +0.0
2,102,483 - ABZR86_RS09440 0.87 -0.0
2,102,483 - ABZR86_RS09440 0.87 -0.3
2,102,531 - -0.0
2,102,531 - -0.4
2,102,658 - +1.1
2,102,671 + -1.1
2,102,747 + ABZR86_RS09445 0.10 +0.2
2,102,748 - ABZR86_RS09445 0.10 -0.4
2,102,748 - ABZR86_RS09445 0.10 +0.8
2,102,748 - ABZR86_RS09445 0.10 +0.5
2,102,748 - ABZR86_RS09445 0.10 +0.7
2,102,768 + ABZR86_RS09445 0.14 +0.9
2,102,769 - ABZR86_RS09445 0.14 +0.3
2,102,777 + ABZR86_RS09445 0.15 +0.0
2,102,777 + ABZR86_RS09445 0.15 +0.7
2,102,777 + ABZR86_RS09445 0.15 -1.8
2,102,777 + ABZR86_RS09445 0.15 +0.1
2,102,778 - ABZR86_RS09445 0.15 +0.3
2,102,778 - ABZR86_RS09445 0.15 +0.2
2,102,778 - ABZR86_RS09445 0.15 -0.1
2,102,781 - ABZR86_RS09445 0.16 +0.2
2,103,164 + ABZR86_RS09445 0.82 -0.9
2,103,164 + ABZR86_RS09445 0.82 -0.3
2,103,164 + ABZR86_RS09445 0.82 +0.1
2,103,164 + ABZR86_RS09445 0.82 -0.1
2,103,164 + ABZR86_RS09445 0.82 +0.6
2,103,165 - ABZR86_RS09445 0.82 -0.3
2,103,191 + ABZR86_RS09445 0.87 -1.1
2,103,192 - ABZR86_RS09445 0.87 -1.7
2,103,239 + +0.4
2,103,240 - -1.5
2,103,271 + -0.3
2,103,303 + +0.6
2,103,303 + -0.2
2,103,303 + -0.8
2,103,303 + +0.3
2,103,303 + -0.1
2,103,303 + -0.2
2,103,303 + -0.1
2,103,304 - -0.8
2,103,304 - +0.8

Or see this region's nucleotide sequence