Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08635

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08630 and ABZR86_RS08635 are separated by 107 nucleotidesABZR86_RS08635 and ABZR86_RS08640 are separated by 328 nucleotides ABZR86_RS08630: ABZR86_RS08630 - SDR family NAD(P)-dependent oxidoreductase, at 1,932,694 to 1,933,461 _RS08630 ABZR86_RS08635: ABZR86_RS08635 - elongation factor P-like protein YeiP, at 1,933,569 to 1,934,135 _RS08635 ABZR86_RS08640: ABZR86_RS08640 - hypothetical protein, at 1,934,464 to 1,935,294 _RS08640 Position (kb) 1933 1934 1935Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1932.657 kb on + strandat 1932.689 kb on + strandat 1932.689 kb on + strandat 1932.690 kb on - strandat 1932.690 kb on - strandat 1933.148 kb on - strand, within ABZR86_RS08630at 1933.175 kb on - strand, within ABZR86_RS08630at 1933.406 kb on - strandat 1933.468 kb on - strandat 1933.468 kb on - strandat 1933.552 kb on - strandat 1933.552 kb on - strandat 1933.552 kb on - strandat 1933.558 kb on + strandat 1933.559 kb on - strandat 1933.623 kb on + strandat 1933.695 kb on + strand, within ABZR86_RS08635at 1933.695 kb on + strand, within ABZR86_RS08635at 1933.785 kb on + strand, within ABZR86_RS08635at 1933.785 kb on + strand, within ABZR86_RS08635at 1933.785 kb on + strand, within ABZR86_RS08635at 1933.785 kb on + strand, within ABZR86_RS08635at 1933.786 kb on - strand, within ABZR86_RS08635at 1933.786 kb on - strand, within ABZR86_RS08635at 1933.786 kb on - strand, within ABZR86_RS08635at 1933.786 kb on - strand, within ABZR86_RS08635at 1933.791 kb on + strand, within ABZR86_RS08635at 1933.791 kb on + strand, within ABZR86_RS08635at 1933.792 kb on - strand, within ABZR86_RS08635at 1933.792 kb on - strand, within ABZR86_RS08635at 1933.833 kb on + strand, within ABZR86_RS08635at 1933.833 kb on + strand, within ABZR86_RS08635at 1933.834 kb on - strand, within ABZR86_RS08635at 1933.842 kb on + strand, within ABZR86_RS08635at 1933.842 kb on + strand, within ABZR86_RS08635at 1933.843 kb on - strand, within ABZR86_RS08635at 1933.843 kb on - strand, within ABZR86_RS08635at 1933.843 kb on - strand, within ABZR86_RS08635at 1933.843 kb on - strand, within ABZR86_RS08635at 1933.881 kb on + strand, within ABZR86_RS08635at 1933.882 kb on - strand, within ABZR86_RS08635at 1933.908 kb on + strand, within ABZR86_RS08635at 1933.908 kb on + strand, within ABZR86_RS08635at 1933.908 kb on + strand, within ABZR86_RS08635at 1933.908 kb on + strand, within ABZR86_RS08635at 1933.908 kb on + strand, within ABZR86_RS08635at 1933.909 kb on - strand, within ABZR86_RS08635at 1933.909 kb on - strand, within ABZR86_RS08635at 1933.909 kb on - strand, within ABZR86_RS08635at 1934.067 kb on + strand, within ABZR86_RS08635at 1934.067 kb on + strand, within ABZR86_RS08635at 1934.067 kb on + strand, within ABZR86_RS08635at 1934.067 kb on + strand, within ABZR86_RS08635at 1934.068 kb on - strand, within ABZR86_RS08635at 1934.068 kb on - strand, within ABZR86_RS08635at 1934.133 kb on + strandat 1934.134 kb on - strandat 1934.316 kb on + strandat 1934.564 kb on + strand, within ABZR86_RS08640at 1934.565 kb on - strand, within ABZR86_RS08640at 1934.699 kb on + strand, within ABZR86_RS08640at 1934.700 kb on - strand, within ABZR86_RS08640at 1934.700 kb on - strand, within ABZR86_RS08640at 1934.700 kb on - strand, within ABZR86_RS08640at 1934.700 kb on - strand, within ABZR86_RS08640at 1934.700 kb on - strand, within ABZR86_RS08640at 1934.700 kb on - strand, within ABZR86_RS08640at 1934.702 kb on + strand, within ABZR86_RS08640at 1934.703 kb on - strand, within ABZR86_RS08640at 1934.703 kb on - strand, within ABZR86_RS08640at 1934.810 kb on + strand, within ABZR86_RS08640at 1934.810 kb on + strand, within ABZR86_RS08640at 1934.811 kb on - strand, within ABZR86_RS08640at 1934.819 kb on + strand, within ABZR86_RS08640at 1934.819 kb on + strand, within ABZR86_RS08640at 1934.819 kb on + strand, within ABZR86_RS08640at 1934.820 kb on - strand, within ABZR86_RS08640at 1934.820 kb on - strand, within ABZR86_RS08640at 1934.820 kb on - strand, within ABZR86_RS08640at 1934.820 kb on - strand, within ABZR86_RS08640at 1934.820 kb on - strand, within ABZR86_RS08640at 1934.870 kb on + strand, within ABZR86_RS08640at 1934.870 kb on + strand, within ABZR86_RS08640at 1934.901 kb on - strand, within ABZR86_RS08640at 1934.939 kb on + strand, within ABZR86_RS08640at 1934.939 kb on + strand, within ABZR86_RS08640at 1934.940 kb on - strand, within ABZR86_RS08640at 1934.940 kb on - strand, within ABZR86_RS08640at 1934.960 kb on + strand, within ABZR86_RS08640at 1934.960 kb on + strand, within ABZR86_RS08640at 1934.960 kb on + strand, within ABZR86_RS08640at 1934.961 kb on - strand, within ABZR86_RS08640at 1935.131 kb on + strand, within ABZR86_RS08640at 1935.131 kb on + strand, within ABZR86_RS08640at 1935.132 kb on - strand, within ABZR86_RS08640

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,932,657 + -0.4
1,932,689 + +0.9
1,932,689 + -0.3
1,932,690 - +0.6
1,932,690 - +1.2
1,933,148 - ABZR86_RS08630 0.59 -0.3
1,933,175 - ABZR86_RS08630 0.63 -2.4
1,933,406 - -0.6
1,933,468 - +0.2
1,933,468 - -0.2
1,933,552 - -0.9
1,933,552 - -0.5
1,933,552 - -0.1
1,933,558 + -0.7
1,933,559 - -0.4
1,933,623 + +0.0
1,933,695 + ABZR86_RS08635 0.22 -0.3
1,933,695 + ABZR86_RS08635 0.22 +1.6
1,933,785 + ABZR86_RS08635 0.38 -0.2
1,933,785 + ABZR86_RS08635 0.38 +0.3
1,933,785 + ABZR86_RS08635 0.38 -0.5
1,933,785 + ABZR86_RS08635 0.38 +0.7
1,933,786 - ABZR86_RS08635 0.38 -0.4
1,933,786 - ABZR86_RS08635 0.38 +0.1
1,933,786 - ABZR86_RS08635 0.38 +0.6
1,933,786 - ABZR86_RS08635 0.38 -0.2
1,933,791 + ABZR86_RS08635 0.39 -2.6
1,933,791 + ABZR86_RS08635 0.39 -0.3
1,933,792 - ABZR86_RS08635 0.39 +0.3
1,933,792 - ABZR86_RS08635 0.39 +0.6
1,933,833 + ABZR86_RS08635 0.47 +0.2
1,933,833 + ABZR86_RS08635 0.47 +0.3
1,933,834 - ABZR86_RS08635 0.47 +0.4
1,933,842 + ABZR86_RS08635 0.48 +1.0
1,933,842 + ABZR86_RS08635 0.48 +0.7
1,933,843 - ABZR86_RS08635 0.48 +1.2
1,933,843 - ABZR86_RS08635 0.48 +3.6
1,933,843 - ABZR86_RS08635 0.48 -1.6
1,933,843 - ABZR86_RS08635 0.48 +0.2
1,933,881 + ABZR86_RS08635 0.55 +0.0
1,933,882 - ABZR86_RS08635 0.55 -0.1
1,933,908 + ABZR86_RS08635 0.60 +0.5
1,933,908 + ABZR86_RS08635 0.60 -0.2
1,933,908 + ABZR86_RS08635 0.60 +0.6
1,933,908 + ABZR86_RS08635 0.60 +1.3
1,933,908 + ABZR86_RS08635 0.60 -0.2
1,933,909 - ABZR86_RS08635 0.60 +0.5
1,933,909 - ABZR86_RS08635 0.60 +0.4
1,933,909 - ABZR86_RS08635 0.60 +0.0
1,934,067 + ABZR86_RS08635 0.88 +0.3
1,934,067 + ABZR86_RS08635 0.88 -0.6
1,934,067 + ABZR86_RS08635 0.88 +0.6
1,934,067 + ABZR86_RS08635 0.88 -1.0
1,934,068 - ABZR86_RS08635 0.88 +0.3
1,934,068 - ABZR86_RS08635 0.88 -0.6
1,934,133 + -0.4
1,934,134 - +0.4
1,934,316 + +0.0
1,934,564 + ABZR86_RS08640 0.12 +0.9
1,934,565 - ABZR86_RS08640 0.12 +0.2
1,934,699 + ABZR86_RS08640 0.28 +1.4
1,934,700 - ABZR86_RS08640 0.28 +0.3
1,934,700 - ABZR86_RS08640 0.28 +0.5
1,934,700 - ABZR86_RS08640 0.28 +0.3
1,934,700 - ABZR86_RS08640 0.28 +1.1
1,934,700 - ABZR86_RS08640 0.28 +1.1
1,934,700 - ABZR86_RS08640 0.28 -0.6
1,934,702 + ABZR86_RS08640 0.29 +1.3
1,934,703 - ABZR86_RS08640 0.29 +0.7
1,934,703 - ABZR86_RS08640 0.29 -0.2
1,934,810 + ABZR86_RS08640 0.42 +2.4
1,934,810 + ABZR86_RS08640 0.42 +1.1
1,934,811 - ABZR86_RS08640 0.42 +0.0
1,934,819 + ABZR86_RS08640 0.43 +1.3
1,934,819 + ABZR86_RS08640 0.43 -0.2
1,934,819 + ABZR86_RS08640 0.43 +0.3
1,934,820 - ABZR86_RS08640 0.43 +0.7
1,934,820 - ABZR86_RS08640 0.43 -0.3
1,934,820 - ABZR86_RS08640 0.43 +0.5
1,934,820 - ABZR86_RS08640 0.43 +1.1
1,934,820 - ABZR86_RS08640 0.43 +2.2
1,934,870 + ABZR86_RS08640 0.49 +0.8
1,934,870 + ABZR86_RS08640 0.49 +0.3
1,934,901 - ABZR86_RS08640 0.53 +1.0
1,934,939 + ABZR86_RS08640 0.57 +1.0
1,934,939 + ABZR86_RS08640 0.57 +1.0
1,934,940 - ABZR86_RS08640 0.57 +1.2
1,934,940 - ABZR86_RS08640 0.57 +1.3
1,934,960 + ABZR86_RS08640 0.60 +0.9
1,934,960 + ABZR86_RS08640 0.60 +0.8
1,934,960 + ABZR86_RS08640 0.60 +1.4
1,934,961 - ABZR86_RS08640 0.60 +0.7
1,935,131 + ABZR86_RS08640 0.80 +0.2
1,935,131 + ABZR86_RS08640 0.80 -0.5
1,935,132 - ABZR86_RS08640 0.80 +1.0

Or see this region's nucleotide sequence