Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08525

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08520 and ABZR86_RS08525 are separated by 17 nucleotidesABZR86_RS08525 and ABZR86_RS08530 are separated by 55 nucleotides ABZR86_RS08520: ABZR86_RS08520 - porin, at 1,905,226 to 1,906,407 _RS08520 ABZR86_RS08525: ABZR86_RS08525 - MFS transporter, at 1,906,425 to 1,907,732 _RS08525 ABZR86_RS08530: ABZR86_RS08530 - PAS-domain containing protein, at 1,907,788 to 1,910,439 _RS08530 Position (kb) 1906 1907 1908Strain fitness (log2 ratio) -2 -1 0 1 2at 1905.487 kb on + strand, within ABZR86_RS08520at 1905.523 kb on + strand, within ABZR86_RS08520at 1905.562 kb on + strand, within ABZR86_RS08520at 1905.563 kb on - strand, within ABZR86_RS08520at 1905.583 kb on + strand, within ABZR86_RS08520at 1905.583 kb on + strand, within ABZR86_RS08520at 1905.670 kb on + strand, within ABZR86_RS08520at 1905.704 kb on - strand, within ABZR86_RS08520at 1905.718 kb on + strand, within ABZR86_RS08520at 1905.718 kb on + strand, within ABZR86_RS08520at 1905.718 kb on + strand, within ABZR86_RS08520at 1905.719 kb on - strand, within ABZR86_RS08520at 1905.736 kb on + strand, within ABZR86_RS08520at 1905.736 kb on + strand, within ABZR86_RS08520at 1906.048 kb on + strand, within ABZR86_RS08520at 1906.090 kb on + strand, within ABZR86_RS08520at 1906.091 kb on - strand, within ABZR86_RS08520at 1906.105 kb on + strand, within ABZR86_RS08520at 1906.108 kb on + strand, within ABZR86_RS08520at 1906.108 kb on + strand, within ABZR86_RS08520at 1906.108 kb on + strand, within ABZR86_RS08520at 1906.109 kb on - strand, within ABZR86_RS08520at 1906.109 kb on - strand, within ABZR86_RS08520at 1906.109 kb on - strand, within ABZR86_RS08520at 1906.123 kb on + strand, within ABZR86_RS08520at 1906.123 kb on + strand, within ABZR86_RS08520at 1906.123 kb on + strand, within ABZR86_RS08520at 1906.123 kb on + strand, within ABZR86_RS08520at 1906.124 kb on - strand, within ABZR86_RS08520at 1906.124 kb on - strand, within ABZR86_RS08520at 1906.219 kb on + strand, within ABZR86_RS08520at 1906.220 kb on - strand, within ABZR86_RS08520at 1906.295 kb on - strandat 1906.295 kb on - strandat 1906.327 kb on + strandat 1906.399 kb on + strandat 1906.399 kb on + strandat 1906.399 kb on + strandat 1906.399 kb on + strandat 1906.405 kb on + strandat 1906.530 kb on + strandat 1906.531 kb on - strandat 1906.539 kb on + strandat 1906.545 kb on + strandat 1906.563 kb on + strand, within ABZR86_RS08525at 1906.564 kb on - strand, within ABZR86_RS08525at 1906.564 kb on - strand, within ABZR86_RS08525at 1906.617 kb on - strand, within ABZR86_RS08525at 1906.771 kb on - strand, within ABZR86_RS08525at 1906.866 kb on + strand, within ABZR86_RS08525at 1906.866 kb on + strand, within ABZR86_RS08525at 1906.867 kb on - strand, within ABZR86_RS08525at 1906.867 kb on - strand, within ABZR86_RS08525at 1906.867 kb on - strand, within ABZR86_RS08525at 1906.867 kb on - strand, within ABZR86_RS08525at 1906.921 kb on - strand, within ABZR86_RS08525at 1906.921 kb on - strand, within ABZR86_RS08525at 1906.921 kb on - strand, within ABZR86_RS08525at 1907.021 kb on + strand, within ABZR86_RS08525at 1907.167 kb on + strand, within ABZR86_RS08525at 1907.204 kb on + strand, within ABZR86_RS08525at 1907.205 kb on - strand, within ABZR86_RS08525at 1907.205 kb on - strand, within ABZR86_RS08525at 1907.217 kb on + strand, within ABZR86_RS08525at 1907.217 kb on + strand, within ABZR86_RS08525at 1907.217 kb on + strand, within ABZR86_RS08525at 1907.218 kb on - strand, within ABZR86_RS08525at 1907.218 kb on - strand, within ABZR86_RS08525at 1907.218 kb on - strand, within ABZR86_RS08525at 1907.218 kb on - strand, within ABZR86_RS08525at 1907.218 kb on - strand, within ABZR86_RS08525at 1907.298 kb on + strand, within ABZR86_RS08525at 1907.298 kb on + strand, within ABZR86_RS08525at 1907.394 kb on + strand, within ABZR86_RS08525at 1907.395 kb on - strand, within ABZR86_RS08525at 1907.395 kb on - strand, within ABZR86_RS08525at 1907.481 kb on + strand, within ABZR86_RS08525at 1907.484 kb on - strand, within ABZR86_RS08525at 1907.484 kb on - strand, within ABZR86_RS08525at 1907.595 kb on + strand, within ABZR86_RS08525at 1907.596 kb on - strand, within ABZR86_RS08525at 1907.634 kb on + strandat 1907.634 kb on + strandat 1907.634 kb on + strandat 1907.641 kb on - strandat 1907.680 kb on + strandat 1907.680 kb on + strandat 1907.682 kb on + strandat 1907.682 kb on + strandat 1907.683 kb on - strandat 1907.683 kb on - strandat 1907.747 kb on + strandat 1907.748 kb on - strandat 1907.748 kb on - strandat 1907.748 kb on - strandat 1908.055 kb on + strand, within ABZR86_RS08530at 1908.056 kb on - strand, within ABZR86_RS08530at 1908.056 kb on - strand, within ABZR86_RS08530at 1908.184 kb on + strand, within ABZR86_RS08530at 1908.184 kb on + strand, within ABZR86_RS08530at 1908.199 kb on + strand, within ABZR86_RS08530at 1908.238 kb on + strand, within ABZR86_RS08530at 1908.238 kb on + strand, within ABZR86_RS08530at 1908.239 kb on - strand, within ABZR86_RS08530at 1908.271 kb on + strand, within ABZR86_RS08530at 1908.336 kb on - strand, within ABZR86_RS08530at 1908.336 kb on - strand, within ABZR86_RS08530

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,905,487 + ABZR86_RS08520 0.22 -0.3
1,905,523 + ABZR86_RS08520 0.25 +0.3
1,905,562 + ABZR86_RS08520 0.28 +0.2
1,905,563 - ABZR86_RS08520 0.29 -0.4
1,905,583 + ABZR86_RS08520 0.30 +0.8
1,905,583 + ABZR86_RS08520 0.30 +1.2
1,905,670 + ABZR86_RS08520 0.38 +0.1
1,905,704 - ABZR86_RS08520 0.40 -1.3
1,905,718 + ABZR86_RS08520 0.42 +1.8
1,905,718 + ABZR86_RS08520 0.42 -0.3
1,905,718 + ABZR86_RS08520 0.42 +0.6
1,905,719 - ABZR86_RS08520 0.42 +0.3
1,905,736 + ABZR86_RS08520 0.43 -0.8
1,905,736 + ABZR86_RS08520 0.43 +0.1
1,906,048 + ABZR86_RS08520 0.70 -0.1
1,906,090 + ABZR86_RS08520 0.73 +1.2
1,906,091 - ABZR86_RS08520 0.73 -0.3
1,906,105 + ABZR86_RS08520 0.74 -0.2
1,906,108 + ABZR86_RS08520 0.75 -0.2
1,906,108 + ABZR86_RS08520 0.75 +1.0
1,906,108 + ABZR86_RS08520 0.75 +0.4
1,906,109 - ABZR86_RS08520 0.75 +0.1
1,906,109 - ABZR86_RS08520 0.75 +0.5
1,906,109 - ABZR86_RS08520 0.75 +0.1
1,906,123 + ABZR86_RS08520 0.76 +0.3
1,906,123 + ABZR86_RS08520 0.76 +0.1
1,906,123 + ABZR86_RS08520 0.76 +1.0
1,906,123 + ABZR86_RS08520 0.76 -2.2
1,906,124 - ABZR86_RS08520 0.76 +0.9
1,906,124 - ABZR86_RS08520 0.76 +0.5
1,906,219 + ABZR86_RS08520 0.84 +0.4
1,906,220 - ABZR86_RS08520 0.84 -0.1
1,906,295 - +1.0
1,906,295 - +0.9
1,906,327 + -0.2
1,906,399 + +0.0
1,906,399 + +0.4
1,906,399 + -0.6
1,906,399 + -2.0
1,906,405 + -0.4
1,906,530 + -0.9
1,906,531 - +1.2
1,906,539 + -0.1
1,906,545 + +0.2
1,906,563 + ABZR86_RS08525 0.11 +0.4
1,906,564 - ABZR86_RS08525 0.11 +0.2
1,906,564 - ABZR86_RS08525 0.11 +0.0
1,906,617 - ABZR86_RS08525 0.15 +1.4
1,906,771 - ABZR86_RS08525 0.26 +1.0
1,906,866 + ABZR86_RS08525 0.34 -0.6
1,906,866 + ABZR86_RS08525 0.34 +0.5
1,906,867 - ABZR86_RS08525 0.34 +0.4
1,906,867 - ABZR86_RS08525 0.34 +0.1
1,906,867 - ABZR86_RS08525 0.34 +0.7
1,906,867 - ABZR86_RS08525 0.34 +0.5
1,906,921 - ABZR86_RS08525 0.38 +0.2
1,906,921 - ABZR86_RS08525 0.38 +1.0
1,906,921 - ABZR86_RS08525 0.38 +1.4
1,907,021 + ABZR86_RS08525 0.46 +2.6
1,907,167 + ABZR86_RS08525 0.57 -0.9
1,907,204 + ABZR86_RS08525 0.60 +0.1
1,907,205 - ABZR86_RS08525 0.60 +0.7
1,907,205 - ABZR86_RS08525 0.60 -0.2
1,907,217 + ABZR86_RS08525 0.61 -0.4
1,907,217 + ABZR86_RS08525 0.61 +0.0
1,907,217 + ABZR86_RS08525 0.61 +0.2
1,907,218 - ABZR86_RS08525 0.61 +0.6
1,907,218 - ABZR86_RS08525 0.61 -0.7
1,907,218 - ABZR86_RS08525 0.61 +1.5
1,907,218 - ABZR86_RS08525 0.61 -0.1
1,907,218 - ABZR86_RS08525 0.61 -0.4
1,907,298 + ABZR86_RS08525 0.67 +0.9
1,907,298 + ABZR86_RS08525 0.67 -0.4
1,907,394 + ABZR86_RS08525 0.74 +0.4
1,907,395 - ABZR86_RS08525 0.74 -0.3
1,907,395 - ABZR86_RS08525 0.74 +0.5
1,907,481 + ABZR86_RS08525 0.81 +0.5
1,907,484 - ABZR86_RS08525 0.81 -0.3
1,907,484 - ABZR86_RS08525 0.81 -0.2
1,907,595 + ABZR86_RS08525 0.89 -1.4
1,907,596 - ABZR86_RS08525 0.90 -1.6
1,907,634 + -0.2
1,907,634 + -0.4
1,907,634 + -0.1
1,907,641 - -0.1
1,907,680 + -0.2
1,907,680 + -0.4
1,907,682 + -0.4
1,907,682 + +0.4
1,907,683 - -0.2
1,907,683 - -0.6
1,907,747 + +0.4
1,907,748 - -2.0
1,907,748 - -0.2
1,907,748 - -0.1
1,908,055 + ABZR86_RS08530 0.10 -0.9
1,908,056 - ABZR86_RS08530 0.10 +1.3
1,908,056 - ABZR86_RS08530 0.10 -0.6
1,908,184 + ABZR86_RS08530 0.15 +0.4
1,908,184 + ABZR86_RS08530 0.15 +0.8
1,908,199 + ABZR86_RS08530 0.15 -0.0
1,908,238 + ABZR86_RS08530 0.17 -0.2
1,908,238 + ABZR86_RS08530 0.17 -0.3
1,908,239 - ABZR86_RS08530 0.17 +0.4
1,908,271 + ABZR86_RS08530 0.18 +0.1
1,908,336 - ABZR86_RS08530 0.21 -0.4
1,908,336 - ABZR86_RS08530 0.21 +0.3

Or see this region's nucleotide sequence