Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06735

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS06730 and ABZR86_RS06735 overlap by 4 nucleotidesABZR86_RS06735 and ABZR86_RS06740 overlap by 4 nucleotidesABZR86_RS06740 and ABZR86_RS06745 are separated by 164 nucleotides ABZR86_RS06730: ABZR86_RS06730 - histidinol dehydrogenase, at 1,480,965 to 1,482,272 _RS06730 ABZR86_RS06735: ABZR86_RS06735 - ATP phosphoribosyltransferase, at 1,482,269 to 1,483,162 _RS06735 ABZR86_RS06740: ABZR86_RS06740 - YerC/YecD family TrpR-related protein, at 1,483,159 to 1,483,506 _RS06740 ABZR86_RS06745: ABZR86_RS06745 - DUF998 domain-containing protein, at 1,483,671 to 1,484,300 _RS06745 Position (kb) 1482 1483 1484Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1481.758 kb on + strand, within ABZR86_RS06730at 1481.759 kb on - strand, within ABZR86_RS06730at 1481.759 kb on - strand, within ABZR86_RS06730at 1481.893 kb on + strand, within ABZR86_RS06730at 1481.894 kb on - strand, within ABZR86_RS06730at 1482.110 kb on - strand, within ABZR86_RS06730at 1482.530 kb on + strand, within ABZR86_RS06735at 1482.531 kb on - strand, within ABZR86_RS06735at 1482.778 kb on - strand, within ABZR86_RS06735at 1482.822 kb on + strand, within ABZR86_RS06735at 1482.823 kb on - strand, within ABZR86_RS06735at 1482.823 kb on - strand, within ABZR86_RS06735at 1482.823 kb on - strand, within ABZR86_RS06735at 1482.965 kb on + strand, within ABZR86_RS06735at 1482.965 kb on + strand, within ABZR86_RS06735at 1483.138 kb on + strandat 1483.232 kb on + strand, within ABZR86_RS06740at 1483.337 kb on + strand, within ABZR86_RS06740at 1483.337 kb on + strand, within ABZR86_RS06740at 1483.541 kb on - strandat 1483.541 kb on - strandat 1483.541 kb on - strandat 1483.635 kb on + strandat 1483.636 kb on - strandat 1483.809 kb on + strand, within ABZR86_RS06745at 1483.809 kb on + strand, within ABZR86_RS06745at 1483.810 kb on - strand, within ABZR86_RS06745at 1483.810 kb on - strand, within ABZR86_RS06745at 1483.833 kb on + strand, within ABZR86_RS06745at 1483.833 kb on + strand, within ABZR86_RS06745at 1483.834 kb on - strand, within ABZR86_RS06745at 1483.834 kb on - strand, within ABZR86_RS06745at 1483.834 kb on - strand, within ABZR86_RS06745at 1483.834 kb on - strand, within ABZR86_RS06745at 1483.834 kb on - strand, within ABZR86_RS06745at 1483.834 kb on - strand, within ABZR86_RS06745at 1483.834 kb on - strand, within ABZR86_RS06745at 1483.848 kb on + strand, within ABZR86_RS06745at 1483.848 kb on + strand, within ABZR86_RS06745at 1483.849 kb on - strand, within ABZR86_RS06745at 1483.849 kb on - strand, within ABZR86_RS06745at 1483.849 kb on - strand, within ABZR86_RS06745at 1483.849 kb on - strand, within ABZR86_RS06745at 1483.851 kb on + strand, within ABZR86_RS06745at 1483.851 kb on + strand, within ABZR86_RS06745at 1483.851 kb on + strand, within ABZR86_RS06745at 1483.852 kb on - strand, within ABZR86_RS06745at 1483.852 kb on - strand, within ABZR86_RS06745at 1483.871 kb on - strand, within ABZR86_RS06745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
1,481,758 + ABZR86_RS06730 0.61 -2.8
1,481,759 - ABZR86_RS06730 0.61 -3.5
1,481,759 - ABZR86_RS06730 0.61 -1.4
1,481,893 + ABZR86_RS06730 0.71 -2.5
1,481,894 - ABZR86_RS06730 0.71 -3.4
1,482,110 - ABZR86_RS06730 0.88 -4.2
1,482,530 + ABZR86_RS06735 0.29 -4.1
1,482,531 - ABZR86_RS06735 0.29 -1.7
1,482,778 - ABZR86_RS06735 0.57 -3.3
1,482,822 + ABZR86_RS06735 0.62 -4.4
1,482,823 - ABZR86_RS06735 0.62 -1.7
1,482,823 - ABZR86_RS06735 0.62 -2.2
1,482,823 - ABZR86_RS06735 0.62 -2.2
1,482,965 + ABZR86_RS06735 0.78 -0.7
1,482,965 + ABZR86_RS06735 0.78 -4.2
1,483,138 + -2.7
1,483,232 + ABZR86_RS06740 0.21 -1.8
1,483,337 + ABZR86_RS06740 0.51 -3.6
1,483,337 + ABZR86_RS06740 0.51 -2.4
1,483,541 - +0.2
1,483,541 - -0.5
1,483,541 - -0.2
1,483,635 + +0.9
1,483,636 - -0.5
1,483,809 + ABZR86_RS06745 0.22 +0.3
1,483,809 + ABZR86_RS06745 0.22 +0.3
1,483,810 - ABZR86_RS06745 0.22 +0.8
1,483,810 - ABZR86_RS06745 0.22 +0.2
1,483,833 + ABZR86_RS06745 0.26 -0.8
1,483,833 + ABZR86_RS06745 0.26 +0.0
1,483,834 - ABZR86_RS06745 0.26 -0.5
1,483,834 - ABZR86_RS06745 0.26 +0.9
1,483,834 - ABZR86_RS06745 0.26 +0.3
1,483,834 - ABZR86_RS06745 0.26 -1.9
1,483,834 - ABZR86_RS06745 0.26 +1.6
1,483,834 - ABZR86_RS06745 0.26 +0.5
1,483,834 - ABZR86_RS06745 0.26 -0.4
1,483,848 + ABZR86_RS06745 0.28 -0.2
1,483,848 + ABZR86_RS06745 0.28 +0.2
1,483,849 - ABZR86_RS06745 0.28 +0.6
1,483,849 - ABZR86_RS06745 0.28 -0.1
1,483,849 - ABZR86_RS06745 0.28 +0.1
1,483,849 - ABZR86_RS06745 0.28 +0.9
1,483,851 + ABZR86_RS06745 0.29 -0.1
1,483,851 + ABZR86_RS06745 0.29 -0.3
1,483,851 + ABZR86_RS06745 0.29 -0.2
1,483,852 - ABZR86_RS06745 0.29 -0.4
1,483,852 - ABZR86_RS06745 0.29 +0.1
1,483,871 - ABZR86_RS06745 0.32 +0.3

Or see this region's nucleotide sequence