Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3141

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3140 and DvMF_3141 are separated by 473 nucleotidesDvMF_3141 and DvMF_3142 are separated by 169 nucleotides DvMF_3140: DvMF_3140 - Citrate transporter (RefSeq), at 3,959,740 to 3,961,173 _3140 DvMF_3141: DvMF_3141 - tRNA guanosine-2'-O-methyltransferase (RefSeq), at 3,961,647 to 3,962,210 _3141 DvMF_3142: DvMF_3142 - glycosyl transferase family 2 (RefSeq), at 3,962,380 to 3,963,672 _3142 Position (kb) 3961 3962 3963Strain fitness (log2 ratio) -1 0 1at 3961.566 kb on - strandat 3961.693 kb on + strandat 3961.779 kb on - strand, within DvMF_3141at 3961.789 kb on - strand, within DvMF_3141at 3962.067 kb on + strand, within DvMF_3141at 3962.467 kb on - strandat 3962.471 kb on + strandat 3962.486 kb on - strandat 3962.598 kb on + strand, within DvMF_3142at 3962.820 kb on + strand, within DvMF_3142at 3962.933 kb on + strand, within DvMF_3142

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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3,961,566 - -0.6
3,961,693 + -0.6
3,961,779 - DvMF_3141 0.23 -0.4
3,961,789 - DvMF_3141 0.25 -0.1
3,962,067 + DvMF_3141 0.74 -0.4
3,962,467 - +0.5
3,962,471 + +0.0
3,962,486 - -0.2
3,962,598 + DvMF_3142 0.17 -1.4
3,962,820 + DvMF_3142 0.34 -0.2
3,962,933 + DvMF_3142 0.43 -1.1

Or see this region's nucleotide sequence