Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3060 and DvMF_3061 are separated by 359 nucleotides DvMF_3061 and DvMF_3062 are separated by 214 nucleotides
DvMF_3060: DvMF_3060 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,862,256 to 3,864,235
_3060
DvMF_3061: DvMF_3061 - ABC transporter related (RefSeq), at 3,864,595 to 3,866,586
_3061
DvMF_3062: DvMF_3062 - Na+/H+ antiporter NhaC (RefSeq), at 3,866,801 to 3,868,207
_3062
Position (kb)
3864
3865
3866
3867 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3863.630 kb on + strand, within DvMF_3060 at 3863.630 kb on + strand, within DvMF_3060 at 3863.684 kb on + strand, within DvMF_3060 at 3863.692 kb on + strand, within DvMF_3060 at 3863.861 kb on - strand, within DvMF_3060 at 3863.902 kb on + strand, within DvMF_3060 at 3864.250 kb on - strand at 3864.664 kb on - strand at 3864.841 kb on + strand, within DvMF_3061 at 3864.849 kb on - strand, within DvMF_3061 at 3864.976 kb on - strand, within DvMF_3061 at 3865.636 kb on + strand, within DvMF_3061 at 3865.828 kb on - strand, within DvMF_3061 at 3865.991 kb on - strand, within DvMF_3061 at 3866.111 kb on - strand, within DvMF_3061 at 3866.118 kb on - strand at 3866.294 kb on - strand, within DvMF_3061 at 3866.296 kb on - strand, within DvMF_3061 at 3866.469 kb on - strand at 3866.700 kb on + strand at 3866.721 kb on - strand at 3866.811 kb on - strand at 3867.007 kb on + strand, within DvMF_3062 at 3867.211 kb on - strand, within DvMF_3062 at 3867.339 kb on - strand, within DvMF_3062 at 3867.493 kb on + strand, within DvMF_3062 at 3867.562 kb on - strand, within DvMF_3062
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml remove 3,863,630 + DvMF_3060 0.69 +0.4 3,863,630 + DvMF_3060 0.69 -0.3 3,863,684 + DvMF_3060 0.72 -0.2 3,863,692 + DvMF_3060 0.73 -0.3 3,863,861 - DvMF_3060 0.81 -0.6 3,863,902 + DvMF_3060 0.83 -0.3 3,864,250 - +0.1 3,864,664 - -0.1 3,864,841 + DvMF_3061 0.12 -1.2 3,864,849 - DvMF_3061 0.13 -0.0 3,864,976 - DvMF_3061 0.19 -0.7 3,865,636 + DvMF_3061 0.52 -0.3 3,865,828 - DvMF_3061 0.62 -0.6 3,865,991 - DvMF_3061 0.70 -0.1 3,866,111 - DvMF_3061 0.76 -1.8 3,866,118 - +2.6 3,866,294 - DvMF_3061 0.85 -0.1 3,866,296 - DvMF_3061 0.85 -0.6 3,866,469 - -0.1 3,866,700 + +0.0 3,866,721 - -0.8 3,866,811 - -0.7 3,867,007 + DvMF_3062 0.15 +0.0 3,867,211 - DvMF_3062 0.29 -0.1 3,867,339 - DvMF_3062 0.38 -1.4 3,867,493 + DvMF_3062 0.49 -0.4 3,867,562 - DvMF_3062 0.54 +0.1
Or see this region's nucleotide sequence