Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2900

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2898 and DvMF_2899 are separated by 42 nucleotidesDvMF_2899 and DvMF_2900 are separated by 165 nucleotidesDvMF_2900 and DvMF_2901 are separated by 10 nucleotides DvMF_2898: DvMF_2898 - protein of unknown function UPF0027 (RefSeq), at 3,658,581 to 3,660,065 _2898 DvMF_2899: DvMF_2899 - hypothetical protein (RefSeq), at 3,660,108 to 3,660,560 _2899 DvMF_2900: DvMF_2900 - putative transcriptional regulator, AsnC family (RefSeq), at 3,660,726 to 3,661,223 _2900 DvMF_2901: DvMF_2901 - Radical SAM domain protein (RefSeq), at 3,661,234 to 3,662,313 _2901 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -1 0 1at 3659.832 kb on - strand, within DvMF_2898at 3659.877 kb on - strand, within DvMF_2898at 3660.166 kb on + strand, within DvMF_2899at 3660.166 kb on + strand, within DvMF_2899at 3660.571 kb on - strandat 3660.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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3,659,832 - DvMF_2898 0.84 -0.3
3,659,877 - DvMF_2898 0.87 -1.0
3,660,166 + DvMF_2899 0.13 -1.6
3,660,166 + DvMF_2899 0.13 -1.3
3,660,571 - -0.5
3,660,637 - -0.8

Or see this region's nucleotide sequence