Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2725

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2723 and DvMF_2724 overlap by 11 nucleotidesDvMF_2724 and DvMF_2725 are separated by 355 nucleotidesDvMF_2725 and DvMF_2726 are separated by 853 nucleotides DvMF_2723: DvMF_2723 - Radical SAM domain protein (RefSeq), at 3,446,611 to 3,447,765 _2723 DvMF_2724: DvMF_2724 - hypothetical protein (RefSeq), at 3,447,755 to 3,448,021 _2724 DvMF_2725: DvMF_2725 - Resolvase domain protein (RefSeq), at 3,448,377 to 3,449,063 _2725 DvMF_2726: DvMF_2726 - ParB domain protein nuclease (RefSeq), at 3,449,917 to 3,450,681 _2726 Position (kb) 3448 3449 3450Strain fitness (log2 ratio) -1 0 1at 3448.083 kb on + strandat 3448.211 kb on - strandat 3448.228 kb on + strandat 3448.388 kb on - strandat 3448.509 kb on - strand, within DvMF_2725at 3448.593 kb on + strand, within DvMF_2725at 3449.012 kb on + strandat 3449.192 kb on + strandat 3449.300 kb on - strandat 3449.406 kb on + strandat 3449.708 kb on - strandat 3449.748 kb on + strandat 3449.766 kb on + strandat 3449.811 kb on - strandat 3449.813 kb on + strandat 3449.815 kb on + strandat 3449.815 kb on + strandat 3449.823 kb on - strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.847 kb on - strandat 3449.894 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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3,448,083 + -1.6
3,448,211 - -1.5
3,448,228 + -0.2
3,448,388 - -0.3
3,448,509 - DvMF_2725 0.19 -0.3
3,448,593 + DvMF_2725 0.31 +0.8
3,449,012 + +1.6
3,449,192 + -0.5
3,449,300 - +0.2
3,449,406 + -0.8
3,449,708 - -0.4
3,449,748 + -0.3
3,449,766 + -0.0
3,449,811 - +0.0
3,449,813 + -1.0
3,449,815 + -0.1
3,449,815 + -0.1
3,449,823 - -1.5
3,449,839 + -0.4
3,449,839 + -0.8
3,449,839 + +0.1
3,449,839 + -0.4
3,449,839 + +0.2
3,449,839 + -0.4
3,449,847 - -0.2
3,449,894 + -0.2

Or see this region's nucleotide sequence