Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2715

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2714 and DvMF_2715 are separated by 483 nucleotidesDvMF_2715 and DvMF_2716 are separated by 531 nucleotides DvMF_2714: DvMF_2714 - protein of unknown function DUF362 (RefSeq), at 3,436,730 to 3,437,710 _2714 DvMF_2715: DvMF_2715 - hypothetical protein (RefSeq), at 3,438,194 to 3,438,523 _2715 DvMF_2716: DvMF_2716 - hypothetical protein (RefSeq), at 3,439,055 to 3,439,375 _2716 Position (kb) 3438 3439Strain fitness (log2 ratio) -2 -1 0 1at 3437.234 kb on - strand, within DvMF_2714at 3437.323 kb on - strand, within DvMF_2714at 3437.463 kb on + strand, within DvMF_2714at 3437.495 kb on + strand, within DvMF_2714at 3437.528 kb on - strand, within DvMF_2714at 3437.544 kb on - strand, within DvMF_2714at 3437.544 kb on - strand, within DvMF_2714at 3437.833 kb on + strandat 3437.937 kb on + strandat 3437.937 kb on + strandat 3438.103 kb on + strandat 3438.253 kb on + strand, within DvMF_2715at 3438.314 kb on + strand, within DvMF_2715at 3438.411 kb on + strand, within DvMF_2715at 3438.836 kb on - strandat 3438.880 kb on - strandat 3438.933 kb on + strandat 3438.941 kb on - strandat 3438.982 kb on + strandat 3438.995 kb on - strandat 3439.032 kb on + strandat 3439.097 kb on + strand, within DvMF_2716at 3439.231 kb on - strand, within DvMF_2716at 3439.317 kb on + strand, within DvMF_2716

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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3,437,234 - DvMF_2714 0.51 -0.6
3,437,323 - DvMF_2714 0.60 -0.7
3,437,463 + DvMF_2714 0.75 -0.7
3,437,495 + DvMF_2714 0.78 +0.0
3,437,528 - DvMF_2714 0.81 -2.0
3,437,544 - DvMF_2714 0.83 -0.0
3,437,544 - DvMF_2714 0.83 -2.1
3,437,833 + -0.7
3,437,937 + -1.0
3,437,937 + +1.2
3,438,103 + -0.1
3,438,253 + DvMF_2715 0.18 +0.6
3,438,314 + DvMF_2715 0.36 +0.4
3,438,411 + DvMF_2715 0.66 -0.9
3,438,836 - -0.6
3,438,880 - +0.2
3,438,933 + -2.5
3,438,941 - -0.0
3,438,982 + -2.0
3,438,995 - -0.5
3,439,032 + -1.0
3,439,097 + DvMF_2716 0.13 -1.1
3,439,231 - DvMF_2716 0.55 -0.6
3,439,317 + DvMF_2716 0.82 -1.2

Or see this region's nucleotide sequence