Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2707

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2706 and DvMF_2707 are separated by 277 nucleotidesDvMF_2707 and DvMF_2708 are separated by 151 nucleotides DvMF_2706: DvMF_2706 - glycosyl transferase group 1 (RefSeq), at 3,424,085 to 3,425,206 _2706 DvMF_2707: DvMF_2707 - putative PAS/PAC sensor protein (RefSeq), at 3,425,484 to 3,427,406 _2707 DvMF_2708: DvMF_2708 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 3,427,558 to 3,428,799 _2708 Position (kb) 3425 3426 3427 3428Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3424.509 kb on - strand, within DvMF_2706at 3424.723 kb on + strand, within DvMF_2706at 3424.750 kb on - strand, within DvMF_2706at 3424.868 kb on + strand, within DvMF_2706at 3425.087 kb on - strand, within DvMF_2706at 3425.445 kb on - strandat 3425.481 kb on + strandat 3425.489 kb on - strandat 3425.489 kb on - strandat 3425.661 kb on + strandat 3425.751 kb on + strand, within DvMF_2707at 3425.774 kb on - strand, within DvMF_2707at 3425.915 kb on + strand, within DvMF_2707at 3425.924 kb on - strand, within DvMF_2707at 3425.966 kb on - strand, within DvMF_2707at 3426.021 kb on + strand, within DvMF_2707at 3426.454 kb on - strand, within DvMF_2707at 3426.746 kb on + strand, within DvMF_2707at 3426.850 kb on - strand, within DvMF_2707at 3427.391 kb on + strandat 3427.714 kb on + strand, within DvMF_2708at 3427.898 kb on - strand, within DvMF_2708at 3428.003 kb on + strand, within DvMF_2708at 3428.011 kb on - strand, within DvMF_2708at 3428.045 kb on + strand, within DvMF_2708at 3428.230 kb on - strand, within DvMF_2708at 3428.391 kb on - strand, within DvMF_2708at 3428.391 kb on - strand, within DvMF_2708

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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3,424,509 - DvMF_2706 0.38 -2.7
3,424,723 + DvMF_2706 0.57 -2.4
3,424,750 - DvMF_2706 0.59 -2.9
3,424,868 + DvMF_2706 0.70 -3.5
3,425,087 - DvMF_2706 0.89 -3.2
3,425,445 - -0.7
3,425,481 + -0.6
3,425,489 - -0.7
3,425,489 - -0.3
3,425,661 + -4.7
3,425,751 + DvMF_2707 0.14 -1.6
3,425,774 - DvMF_2707 0.15 -2.5
3,425,915 + DvMF_2707 0.22 -2.7
3,425,924 - DvMF_2707 0.23 -3.5
3,425,966 - DvMF_2707 0.25 -0.9
3,426,021 + DvMF_2707 0.28 -2.6
3,426,454 - DvMF_2707 0.50 -2.4
3,426,746 + DvMF_2707 0.66 -2.0
3,426,850 - DvMF_2707 0.71 -1.2
3,427,391 + -2.0
3,427,714 + DvMF_2708 0.13 -3.7
3,427,898 - DvMF_2708 0.27 -2.3
3,428,003 + DvMF_2708 0.36 -1.0
3,428,011 - DvMF_2708 0.36 -1.3
3,428,045 + DvMF_2708 0.39 -2.0
3,428,230 - DvMF_2708 0.54 -3.2
3,428,391 - DvMF_2708 0.67 -2.7
3,428,391 - DvMF_2708 0.67 -1.0

Or see this region's nucleotide sequence