Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2549 and DvMF_2550 overlap by 4 nucleotides DvMF_2550 and DvMF_2551 are separated by 273 nucleotides
DvMF_2549: DvMF_2549 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 3,222,222 to 3,223,562
_2549
DvMF_2550: DvMF_2550 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,223,559 to 3,225,616
_2550
DvMF_2551: DvMF_2551 - response regulator receiver protein (RefSeq), at 3,225,890 to 3,226,858
_2551
Position (kb)
3223
3224
3225
3226 Strain fitness (log2 ratio)
-2
-1
0
1 at 3222.677 kb on + strand, within DvMF_2549 at 3222.772 kb on - strand, within DvMF_2549 at 3223.020 kb on - strand, within DvMF_2549 at 3223.020 kb on - strand, within DvMF_2549 at 3223.052 kb on - strand, within DvMF_2549 at 3223.226 kb on - strand, within DvMF_2549 at 3223.226 kb on - strand, within DvMF_2549 at 3223.378 kb on - strand, within DvMF_2549 at 3223.398 kb on + strand, within DvMF_2549 at 3223.462 kb on - strand at 3223.874 kb on - strand, within DvMF_2550 at 3223.874 kb on - strand, within DvMF_2550 at 3224.011 kb on - strand, within DvMF_2550 at 3224.011 kb on - strand, within DvMF_2550 at 3224.029 kb on - strand, within DvMF_2550 at 3224.123 kb on - strand, within DvMF_2550 at 3224.310 kb on + strand, within DvMF_2550 at 3224.313 kb on + strand, within DvMF_2550 at 3224.346 kb on - strand, within DvMF_2550 at 3224.470 kb on - strand, within DvMF_2550 at 3224.475 kb on + strand, within DvMF_2550 at 3224.695 kb on + strand, within DvMF_2550 at 3224.781 kb on - strand, within DvMF_2550 at 3224.898 kb on - strand, within DvMF_2550 at 3225.051 kb on - strand, within DvMF_2550 at 3225.440 kb on - strand at 3225.568 kb on - strand at 3225.900 kb on + strand at 3225.929 kb on - strand at 3225.962 kb on - strand at 3226.002 kb on + strand, within DvMF_2551 at 3226.245 kb on + strand, within DvMF_2551 at 3226.266 kb on + strand, within DvMF_2551 at 3226.372 kb on + strand, within DvMF_2551 at 3226.382 kb on + strand, within DvMF_2551
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml remove 3,222,677 + DvMF_2549 0.34 -0.6 3,222,772 - DvMF_2549 0.41 -1.8 3,223,020 - DvMF_2549 0.60 -0.5 3,223,020 - DvMF_2549 0.60 -0.4 3,223,052 - DvMF_2549 0.62 +0.3 3,223,226 - DvMF_2549 0.75 -0.7 3,223,226 - DvMF_2549 0.75 -0.3 3,223,378 - DvMF_2549 0.86 -0.8 3,223,398 + DvMF_2549 0.88 +0.8 3,223,462 - +0.0 3,223,874 - DvMF_2550 0.15 -0.4 3,223,874 - DvMF_2550 0.15 -0.6 3,224,011 - DvMF_2550 0.22 -0.2 3,224,011 - DvMF_2550 0.22 -0.7 3,224,029 - DvMF_2550 0.23 -0.6 3,224,123 - DvMF_2550 0.27 -0.4 3,224,310 + DvMF_2550 0.36 +1.0 3,224,313 + DvMF_2550 0.37 -0.1 3,224,346 - DvMF_2550 0.38 -0.1 3,224,470 - DvMF_2550 0.44 +0.0 3,224,475 + DvMF_2550 0.45 +0.7 3,224,695 + DvMF_2550 0.55 -0.5 3,224,781 - DvMF_2550 0.59 -0.7 3,224,898 - DvMF_2550 0.65 -0.8 3,225,051 - DvMF_2550 0.72 -0.3 3,225,440 - -1.0 3,225,568 - -0.5 3,225,900 + -0.3 3,225,929 - +0.0 3,225,962 - +0.3 3,226,002 + DvMF_2551 0.12 -1.8 3,226,245 + DvMF_2551 0.37 -0.6 3,226,266 + DvMF_2551 0.39 +0.3 3,226,372 + DvMF_2551 0.50 -0.4 3,226,382 + DvMF_2551 0.51 -0.0
Or see this region's nucleotide sequence