Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2513

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2511 and DvMF_2512 are separated by 321 nucleotidesDvMF_2512 and infB are separated by 105 nucleotidesinfB and DvMF_2514 overlap by 4 nucleotidesDvMF_2514 and nusA are separated by 7 nucleotides DvMF_2511: DvMF_2511 - phosphoesterase RecJ domain protein (RefSeq), at 3,166,177 to 3,167,169 _2511 DvMF_2512: DvMF_2512 - protein of unknown function DUF503 (RefSeq), at 3,167,491 to 3,167,799 _2512 DvMF_2513: infB - translation initiation factor IF-2 (RefSeq), at 3,167,905 to 3,171,144 infB DvMF_2514: DvMF_2514 - hypothetical protein (RefSeq), at 3,171,141 to 3,171,392 _2514 DvMF_2515: nusA - transcription elongation factor NusA (RefSeq), at 3,171,400 to 3,172,731 nusA Position (kb) 3167 3168 3169 3170 3171 3172Strain fitness (log2 ratio) -1 0 1at 3167.546 kb on + strand, within DvMF_2512at 3171.406 kb on - strandat 3171.677 kb on - strand, within nusA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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3,167,546 + DvMF_2512 0.18 -1.0
3,171,406 - -0.4
3,171,677 - nusA DvMF_2515 0.21 +0.8

Or see this region's nucleotide sequence