Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2466

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2465 and DvMF_2466 are separated by 323 nucleotidesDvMF_2466 and DvMF_2467 are separated by 73 nucleotidesDvMF_2467 and DvMF_2468 are separated by 58 nucleotides DvMF_2465: DvMF_2465 - transcriptional regulator, LysR family (RefSeq), at 3,109,030 to 3,110,301 _2465 DvMF_2466: DvMF_2466 - no description, at 3,110,625 to 3,112,035 _2466 DvMF_2467: DvMF_2467 - hypothetical protein (RefSeq), at 3,112,109 to 3,112,639 _2467 DvMF_2468: DvMF_2468 - molybdopterin-containing oxidoreductase membrane anchor subunit (RefSeq), at 3,112,698 to 3,113,495 _2468 Position (kb) 3110 3111 3112 3113Strain fitness (log2 ratio) -2 -1 0 1at 3109.748 kb on + strand, within DvMF_2465at 3109.924 kb on - strand, within DvMF_2465at 3110.164 kb on + strand, within DvMF_2465at 3110.166 kb on - strand, within DvMF_2465at 3110.287 kb on - strandat 3110.358 kb on - strandat 3110.432 kb on - strandat 3110.723 kb on - strandat 3110.813 kb on + strand, within DvMF_2466at 3110.892 kb on - strand, within DvMF_2466at 3110.892 kb on - strand, within DvMF_2466at 3110.909 kb on + strand, within DvMF_2466at 3110.947 kb on + strand, within DvMF_2466at 3111.043 kb on + strand, within DvMF_2466at 3111.187 kb on + strand, within DvMF_2466at 3111.304 kb on - strand, within DvMF_2466at 3111.405 kb on + strand, within DvMF_2466at 3111.532 kb on + strand, within DvMF_2466at 3111.773 kb on + strand, within DvMF_2466at 3111.846 kb on - strand, within DvMF_2466at 3111.846 kb on - strand, within DvMF_2466at 3111.900 kb on - strandat 3111.946 kb on + strandat 3111.954 kb on - strandat 3111.965 kb on + strandat 3112.050 kb on - strandat 3112.149 kb on + strandat 3112.191 kb on - strand, within DvMF_2467at 3112.331 kb on - strand, within DvMF_2467at 3112.340 kb on + strand, within DvMF_2467at 3112.348 kb on - strand, within DvMF_2467at 3112.358 kb on - strand, within DvMF_2467at 3112.359 kb on - strand, within DvMF_2467at 3112.381 kb on - strand, within DvMF_2467at 3112.696 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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3,109,748 + DvMF_2465 0.56 -0.7
3,109,924 - DvMF_2465 0.70 -0.3
3,110,164 + DvMF_2465 0.89 -0.8
3,110,166 - DvMF_2465 0.89 -0.6
3,110,287 - -0.1
3,110,358 - -0.3
3,110,432 - -1.1
3,110,723 - -0.2
3,110,813 + DvMF_2466 0.13 -0.9
3,110,892 - DvMF_2466 0.19 +0.2
3,110,892 - DvMF_2466 0.19 -1.0
3,110,909 + DvMF_2466 0.20 -0.1
3,110,947 + DvMF_2466 0.23 +0.1
3,111,043 + DvMF_2466 0.30 +0.2
3,111,187 + DvMF_2466 0.40 +0.9
3,111,304 - DvMF_2466 0.48 -0.1
3,111,405 + DvMF_2466 0.55 -0.4
3,111,532 + DvMF_2466 0.64 -0.0
3,111,773 + DvMF_2466 0.81 -0.4
3,111,846 - DvMF_2466 0.87 -0.6
3,111,846 - DvMF_2466 0.87 -0.0
3,111,900 - -0.8
3,111,946 + -0.0
3,111,954 - -0.6
3,111,965 + -0.6
3,112,050 - -1.5
3,112,149 + -0.4
3,112,191 - DvMF_2467 0.15 -1.8
3,112,331 - DvMF_2467 0.42 -0.7
3,112,340 + DvMF_2467 0.44 +0.3
3,112,348 - DvMF_2467 0.45 +0.5
3,112,358 - DvMF_2467 0.47 -1.7
3,112,359 - DvMF_2467 0.47 -0.5
3,112,381 - DvMF_2467 0.51 -1.3
3,112,696 + -0.4

Or see this region's nucleotide sequence