Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2207

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2206 and era are separated by 975 nucleotidesera and DvMF_2208 are separated by 129 nucleotides DvMF_2206: DvMF_2206 - hypothetical protein (RefSeq), at 2,759,859 to 2,760,134 _2206 DvMF_2207: era - GTP-binding protein Era (RefSeq), at 2,761,110 to 2,762,033 era DvMF_2208: DvMF_2208 - alanine racemase domain protein (RefSeq), at 2,762,163 to 2,762,981 _2208 Position (kb) 2761 2762 2763Strain fitness (log2 ratio) -2 -1 0 1at 2760.308 kb on + strandat 2760.425 kb on - strandat 2760.466 kb on - strandat 2760.585 kb on - strandat 2760.612 kb on + strandat 2760.620 kb on - strandat 2760.882 kb on - strandat 2760.921 kb on + strandat 2761.980 kb on + strandat 2762.222 kb on - strandat 2762.327 kb on + strand, within DvMF_2208at 2762.549 kb on + strand, within DvMF_2208at 2762.555 kb on - strand, within DvMF_2208at 2762.584 kb on + strand, within DvMF_2208

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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2,760,308 + -0.4
2,760,425 - -1.7
2,760,466 - -0.1
2,760,585 - +0.6
2,760,612 + -0.2
2,760,620 - -1.8
2,760,882 - -1.3
2,760,921 + -0.3
2,761,980 + +0.3
2,762,222 - +1.4
2,762,327 + DvMF_2208 0.20 -0.5
2,762,549 + DvMF_2208 0.47 -0.4
2,762,555 - DvMF_2208 0.48 -0.4
2,762,584 + DvMF_2208 0.51 -0.2

Or see this region's nucleotide sequence