Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2047 and DvMF_2048 are separated by 639 nucleotides DvMF_2048 and DvMF_2049 are separated by 388 nucleotides
DvMF_2047: DvMF_2047 - Cobyrinic acid ac-diamide synthase (RefSeq), at 2,537,995 to 2,538,783
_2047
DvMF_2048: DvMF_2048 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,539,423 to 2,540,430
_2048
DvMF_2049: DvMF_2049 - band 7 protein (RefSeq), at 2,540,819 to 2,541,568
_2049
Position (kb)
2539
2540
2541 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2538.426 kb on - strand, within DvMF_2047 at 2538.443 kb on + strand, within DvMF_2047 at 2538.461 kb on - strand, within DvMF_2047 at 2538.470 kb on - strand, within DvMF_2047 at 2538.479 kb on + strand, within DvMF_2047 at 2538.479 kb on + strand, within DvMF_2047 at 2538.540 kb on + strand, within DvMF_2047 at 2538.555 kb on - strand, within DvMF_2047 at 2538.630 kb on - strand, within DvMF_2047 at 2538.650 kb on + strand, within DvMF_2047 at 2538.650 kb on + strand, within DvMF_2047 at 2538.711 kb on + strand at 2538.719 kb on - strand at 2538.728 kb on + strand at 2538.736 kb on - strand at 2538.757 kb on - strand at 2538.795 kb on - strand at 2538.805 kb on - strand at 2538.890 kb on + strand at 2538.898 kb on - strand at 2538.898 kb on - strand at 2538.903 kb on - strand at 2538.903 kb on - strand at 2538.904 kb on - strand at 2538.905 kb on - strand at 2539.019 kb on - strand at 2539.093 kb on + strand at 2539.119 kb on + strand at 2539.132 kb on - strand at 2539.188 kb on - strand at 2539.349 kb on + strand at 2539.357 kb on - strand at 2539.390 kb on - strand at 2539.411 kb on + strand at 2540.459 kb on + strand at 2540.470 kb on + strand at 2540.584 kb on + strand at 2540.614 kb on + strand at 2540.614 kb on + strand at 2540.622 kb on - strand at 2540.629 kb on + strand at 2540.629 kb on + strand at 2540.629 kb on + strand at 2540.629 kb on + strand at 2540.637 kb on - strand at 2540.637 kb on - strand at 2540.637 kb on - strand at 2540.637 kb on - strand at 2540.649 kb on + strand at 2540.649 kb on + strand at 2540.649 kb on + strand at 2540.649 kb on + strand at 2540.657 kb on - strand at 2540.657 kb on - strand at 2540.657 kb on - strand at 2540.722 kb on + strand at 2540.727 kb on + strand at 2540.727 kb on + strand at 2540.730 kb on - strand at 2540.730 kb on - strand at 2540.732 kb on + strand at 2540.735 kb on - strand at 2540.740 kb on - strand at 2540.750 kb on - strand at 2540.752 kb on + strand at 2540.752 kb on + strand at 2540.752 kb on + strand at 2540.760 kb on - strand at 2540.805 kb on - strand at 2540.816 kb on + strand at 2540.816 kb on + strand at 2540.817 kb on + strand at 2540.869 kb on - strand at 2540.869 kb on - strand at 2540.958 kb on + strand, within DvMF_2049 at 2540.958 kb on + strand, within DvMF_2049 at 2541.000 kb on + strand, within DvMF_2049 at 2541.032 kb on - strand, within DvMF_2049 at 2541.072 kb on + strand, within DvMF_2049 at 2541.080 kb on - strand, within DvMF_2049 at 2541.106 kb on - strand, within DvMF_2049 at 2541.118 kb on - strand, within DvMF_2049 at 2541.186 kb on - strand, within DvMF_2049 at 2541.190 kb on + strand, within DvMF_2049 at 2541.212 kb on + strand, within DvMF_2049 at 2541.217 kb on + strand, within DvMF_2049 at 2541.225 kb on - strand, within DvMF_2049 at 2541.229 kb on - strand, within DvMF_2049 at 2541.229 kb on - strand, within DvMF_2049 at 2541.229 kb on - strand, within DvMF_2049 at 2541.240 kb on - strand, within DvMF_2049 at 2541.243 kb on + strand, within DvMF_2049 at 2541.292 kb on + strand, within DvMF_2049 at 2541.371 kb on - strand, within DvMF_2049 at 2541.377 kb on + strand, within DvMF_2049
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml remove 2,538,426 - DvMF_2047 0.55 -0.7 2,538,443 + DvMF_2047 0.57 -1.2 2,538,461 - DvMF_2047 0.59 -0.8 2,538,470 - DvMF_2047 0.60 -1.2 2,538,479 + DvMF_2047 0.61 -1.2 2,538,479 + DvMF_2047 0.61 -4.2 2,538,540 + DvMF_2047 0.69 -2.9 2,538,555 - DvMF_2047 0.71 -2.8 2,538,630 - DvMF_2047 0.80 -0.3 2,538,650 + DvMF_2047 0.83 -2.0 2,538,650 + DvMF_2047 0.83 -1.1 2,538,711 + -2.7 2,538,719 - -0.9 2,538,728 + -0.1 2,538,736 - -0.1 2,538,757 - -2.3 2,538,795 - -0.9 2,538,805 - -0.4 2,538,890 + -1.9 2,538,898 - -0.2 2,538,898 - +0.1 2,538,903 - +0.7 2,538,903 - -0.0 2,538,904 - -0.5 2,538,905 - -0.5 2,539,019 - +1.1 2,539,093 + -0.2 2,539,119 + +0.7 2,539,132 - -0.5 2,539,188 - -0.8 2,539,349 + -0.9 2,539,357 - -1.0 2,539,390 - -0.6 2,539,411 + -1.3 2,540,459 + -0.5 2,540,470 + -1.0 2,540,584 + +0.5 2,540,614 + +0.2 2,540,614 + -0.5 2,540,622 - -0.3 2,540,629 + -0.2 2,540,629 + +0.0 2,540,629 + +0.2 2,540,629 + -1.6 2,540,637 - -0.2 2,540,637 - -0.8 2,540,637 - -3.5 2,540,637 - -0.1 2,540,649 + -0.9 2,540,649 + -1.1 2,540,649 + +0.0 2,540,649 + -0.3 2,540,657 - -0.3 2,540,657 - -0.3 2,540,657 - -0.8 2,540,722 + -0.6 2,540,727 + -0.0 2,540,727 + -1.0 2,540,730 - -1.0 2,540,730 - -0.9 2,540,732 + -0.6 2,540,735 - -0.6 2,540,740 - -0.9 2,540,750 - -0.4 2,540,752 + -3.6 2,540,752 + -0.7 2,540,752 + +0.3 2,540,760 - -0.2 2,540,805 - -0.7 2,540,816 + -0.3 2,540,816 + -0.7 2,540,817 + -0.9 2,540,869 - -2.2 2,540,869 - -0.3 2,540,958 + DvMF_2049 0.19 -0.8 2,540,958 + DvMF_2049 0.19 -0.5 2,541,000 + DvMF_2049 0.24 -0.9 2,541,032 - DvMF_2049 0.28 -0.5 2,541,072 + DvMF_2049 0.34 -0.1 2,541,080 - DvMF_2049 0.35 -0.8 2,541,106 - DvMF_2049 0.38 -0.6 2,541,118 - DvMF_2049 0.40 -0.0 2,541,186 - DvMF_2049 0.49 -0.8 2,541,190 + DvMF_2049 0.49 -1.9 2,541,212 + DvMF_2049 0.52 -0.8 2,541,217 + DvMF_2049 0.53 -0.4 2,541,225 - DvMF_2049 0.54 -0.9 2,541,229 - DvMF_2049 0.55 -0.4 2,541,229 - DvMF_2049 0.55 -0.5 2,541,229 - DvMF_2049 0.55 -0.7 2,541,240 - DvMF_2049 0.56 -0.6 2,541,243 + DvMF_2049 0.57 -0.6 2,541,292 + DvMF_2049 0.63 -0.1 2,541,371 - DvMF_2049 0.74 -0.1 2,541,377 + DvMF_2049 0.74 -1.0
Or see this region's nucleotide sequence