Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1614

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1613 and DvMF_1614 are separated by 227 nucleotidesDvMF_1614 and DvMF_1615 are separated by 297 nucleotides DvMF_1613: DvMF_1613 - formylmethanofuran dehydrogenase subunit E region (RefSeq), at 1,987,501 to 1,989,144 _1613 DvMF_1614: DvMF_1614 - transcriptional regulator, AraC family (RefSeq), at 1,989,372 to 1,990,472 _1614 DvMF_1615: DvMF_1615 - hypothetical protein (RefSeq), at 1,990,770 to 1,991,183 _1615 Position (kb) 1989 1990 1991Strain fitness (log2 ratio) -2 -1 0 1at 1988.478 kb on + strand, within DvMF_1613at 1988.763 kb on - strand, within DvMF_1613at 1988.816 kb on + strand, within DvMF_1613at 1988.857 kb on + strand, within DvMF_1613at 1988.907 kb on + strand, within DvMF_1613at 1988.965 kb on - strand, within DvMF_1613at 1988.992 kb on - strandat 1989.088 kb on + strandat 1989.415 kb on + strandat 1989.578 kb on - strand, within DvMF_1614at 1989.745 kb on + strand, within DvMF_1614at 1989.881 kb on + strand, within DvMF_1614at 1989.893 kb on + strand, within DvMF_1614at 1989.912 kb on + strand, within DvMF_1614at 1989.920 kb on - strand, within DvMF_1614at 1990.244 kb on + strand, within DvMF_1614at 1990.315 kb on - strand, within DvMF_1614at 1990.385 kb on - strandat 1990.402 kb on - strandat 1990.440 kb on + strandat 1990.473 kb on - strandat 1990.495 kb on + strandat 1990.495 kb on - strandat 1990.535 kb on - strandat 1991.034 kb on - strand, within DvMF_1615at 1991.365 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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1,988,478 + DvMF_1613 0.59 -0.8
1,988,763 - DvMF_1613 0.77 +0.4
1,988,816 + DvMF_1613 0.80 +1.0
1,988,857 + DvMF_1613 0.82 +0.1
1,988,907 + DvMF_1613 0.86 -0.3
1,988,965 - DvMF_1613 0.89 -1.5
1,988,992 - -1.5
1,989,088 + -0.5
1,989,415 + -0.4
1,989,578 - DvMF_1614 0.19 -2.0
1,989,745 + DvMF_1614 0.34 -1.1
1,989,881 + DvMF_1614 0.46 -0.8
1,989,893 + DvMF_1614 0.47 +0.2
1,989,912 + DvMF_1614 0.49 +0.4
1,989,920 - DvMF_1614 0.50 -1.1
1,990,244 + DvMF_1614 0.79 -1.4
1,990,315 - DvMF_1614 0.86 -0.1
1,990,385 - -0.7
1,990,402 - -0.4
1,990,440 + -0.6
1,990,473 - -0.7
1,990,495 + +0.1
1,990,495 - -0.8
1,990,535 - -1.3
1,991,034 - DvMF_1615 0.64 -1.2
1,991,365 + -0.8

Or see this region's nucleotide sequence