Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1374

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1372 and DvMF_1373 are separated by 687 nucleotidesDvMF_1373 and DvMF_1374 overlap by 1 nucleotidesDvMF_1374 and DvMF_1375 overlap by 32 nucleotides DvMF_1372: DvMF_1372 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,679,067 to 1,681,502 _1372 DvMF_1373: DvMF_1373 - hypothetical protein (RefSeq), at 1,682,190 to 1,682,438 _1373 DvMF_1374: DvMF_1374 - putative PAS/PAC sensor protein (RefSeq), at 1,682,438 to 1,683,664 _1374 DvMF_1375: DvMF_1375 - histidine kinase (RefSeq), at 1,683,633 to 1,684,976 _1375 Position (kb) 1682 1683 1684Strain fitness (log2 ratio) -1 0 1at 1681.639 kb on - strandat 1682.015 kb on - strandat 1682.098 kb on + strandat 1682.116 kb on - strandat 1682.143 kb on + strandat 1682.164 kb on - strandat 1682.196 kb on - strandat 1682.227 kb on + strand, within DvMF_1373at 1682.567 kb on - strand, within DvMF_1374at 1682.595 kb on - strand, within DvMF_1374at 1682.613 kb on + strand, within DvMF_1374at 1682.795 kb on - strand, within DvMF_1374at 1682.838 kb on + strand, within DvMF_1374at 1682.957 kb on + strand, within DvMF_1374at 1682.965 kb on - strand, within DvMF_1374at 1682.993 kb on - strand, within DvMF_1374at 1683.059 kb on + strand, within DvMF_1374at 1683.139 kb on + strand, within DvMF_1374at 1683.147 kb on - strand, within DvMF_1374at 1683.471 kb on + strand, within DvMF_1374at 1683.545 kb on + strandat 1683.845 kb on - strand, within DvMF_1375at 1683.950 kb on - strand, within DvMF_1375at 1683.957 kb on + strand, within DvMF_1375at 1684.064 kb on - strand, within DvMF_1375at 1684.102 kb on - strand, within DvMF_1375at 1684.194 kb on - strand, within DvMF_1375at 1684.231 kb on + strand, within DvMF_1375at 1684.239 kb on - strand, within DvMF_1375at 1684.267 kb on - strand, within DvMF_1375at 1684.391 kb on + strand, within DvMF_1375at 1684.576 kb on - strand, within DvMF_1375at 1684.605 kb on - strand, within DvMF_1375at 1684.630 kb on - strand, within DvMF_1375

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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1,681,639 - -0.3
1,682,015 - +0.5
1,682,098 + -0.3
1,682,116 - +0.7
1,682,143 + -1.4
1,682,164 - -0.1
1,682,196 - -1.5
1,682,227 + DvMF_1373 0.15 -0.1
1,682,567 - DvMF_1374 0.11 +0.1
1,682,595 - DvMF_1374 0.13 -1.0
1,682,613 + DvMF_1374 0.14 -0.6
1,682,795 - DvMF_1374 0.29 -0.0
1,682,838 + DvMF_1374 0.33 -0.5
1,682,957 + DvMF_1374 0.42 +0.3
1,682,965 - DvMF_1374 0.43 -0.3
1,682,993 - DvMF_1374 0.45 -0.2
1,683,059 + DvMF_1374 0.51 -1.1
1,683,139 + DvMF_1374 0.57 -0.1
1,683,147 - DvMF_1374 0.58 +0.1
1,683,471 + DvMF_1374 0.84 -0.4
1,683,545 + -1.7
1,683,845 - DvMF_1375 0.16 -0.1
1,683,950 - DvMF_1375 0.24 -0.2
1,683,957 + DvMF_1375 0.24 +0.3
1,684,064 - DvMF_1375 0.32 +0.0
1,684,102 - DvMF_1375 0.35 +0.2
1,684,194 - DvMF_1375 0.42 -0.1
1,684,231 + DvMF_1375 0.44 +0.3
1,684,239 - DvMF_1375 0.45 -0.2
1,684,267 - DvMF_1375 0.47 -0.3
1,684,391 + DvMF_1375 0.56 -1.7
1,684,576 - DvMF_1375 0.70 +0.3
1,684,605 - DvMF_1375 0.72 +0.3
1,684,630 - DvMF_1375 0.74 -0.1

Or see this region's nucleotide sequence