Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1085

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1084 and DvMF_1085 are separated by 67 nucleotidesDvMF_1085 and DvMF_1086 are separated by 9 nucleotides DvMF_1084: DvMF_1084 - OmpA/MotB domain protein (RefSeq), at 1,323,133 to 1,323,858 _1084 DvMF_1085: DvMF_1085 - flagellar motor protein MotA (RefSeq), at 1,323,926 to 1,324,771 _1085 DvMF_1086: DvMF_1086 - hypothetical protein (RefSeq), at 1,324,781 to 1,325,494 _1086 Position (kb) 1323 1324 1325Strain fitness (log2 ratio) -1 0 1 2at 1323.225 kb on + strand, within DvMF_1084at 1323.226 kb on - strand, within DvMF_1084at 1323.249 kb on + strand, within DvMF_1084at 1323.257 kb on - strand, within DvMF_1084at 1323.299 kb on - strand, within DvMF_1084at 1323.396 kb on + strand, within DvMF_1084at 1323.404 kb on - strand, within DvMF_1084at 1323.490 kb on - strand, within DvMF_1084at 1324.062 kb on + strand, within DvMF_1085at 1324.072 kb on - strand, within DvMF_1085at 1324.138 kb on - strand, within DvMF_1085at 1324.167 kb on + strand, within DvMF_1085at 1324.232 kb on - strand, within DvMF_1085at 1324.608 kb on - strand, within DvMF_1085at 1324.608 kb on - strand, within DvMF_1085at 1324.857 kb on - strand, within DvMF_1086at 1325.112 kb on + strand, within DvMF_1086at 1325.236 kb on + strand, within DvMF_1086at 1325.294 kb on + strand, within DvMF_1086at 1325.442 kb on + strandat 1325.640 kb on + strandat 1325.712 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
remove
1,323,225 + DvMF_1084 0.13 +1.3
1,323,226 - DvMF_1084 0.13 +1.3
1,323,249 + DvMF_1084 0.16 +0.9
1,323,257 - DvMF_1084 0.17 +1.9
1,323,299 - DvMF_1084 0.23 +1.7
1,323,396 + DvMF_1084 0.36 +1.4
1,323,404 - DvMF_1084 0.37 +1.9
1,323,490 - DvMF_1084 0.49 +1.9
1,324,062 + DvMF_1085 0.16 +1.2
1,324,072 - DvMF_1085 0.17 +1.9
1,324,138 - DvMF_1085 0.25 +1.9
1,324,167 + DvMF_1085 0.28 +1.5
1,324,232 - DvMF_1085 0.36 +1.9
1,324,608 - DvMF_1085 0.81 +2.2
1,324,608 - DvMF_1085 0.81 +2.4
1,324,857 - DvMF_1086 0.11 +0.2
1,325,112 + DvMF_1086 0.46 -0.8
1,325,236 + DvMF_1086 0.64 +0.8
1,325,294 + DvMF_1086 0.72 +0.3
1,325,442 + -0.2
1,325,640 + +0.1
1,325,712 + -1.3

Or see this region's nucleotide sequence