Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0997

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgltX and DvMF_0997 are separated by 257 nucleotidesDvMF_0997 and DvMF_0998 are separated by 314 nucleotides DvMF_0996: gltX - glutamyl-tRNA synthetase (RefSeq), at 1,210,482 to 1,211,876 gltX DvMF_0997: DvMF_0997 - nitrogen-fixing NifU domain protein (RefSeq), at 1,212,134 to 1,212,367 _0997 DvMF_0998: DvMF_0998 - hypothetical protein (RefSeq), at 1,212,682 to 1,213,581 _0998 Position (kb) 1212 1213Strain fitness (log2 ratio) -1 0 1at 1211.960 kb on + strandat 1211.968 kb on - strandat 1212.149 kb on - strandat 1212.219 kb on + strand, within DvMF_0997at 1212.222 kb on - strand, within DvMF_0997at 1213.099 kb on + strand, within DvMF_0998

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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1,211,960 + -0.6
1,211,968 - -0.4
1,212,149 - +0.3
1,212,219 + DvMF_0997 0.36 +0.8
1,212,222 - DvMF_0997 0.38 +0.3
1,213,099 + DvMF_0998 0.46 +0.3

Or see this region's nucleotide sequence