Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0824

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0823 and DvMF_0824 are separated by 7 nucleotidesDvMF_0824 and DvMF_0825 are separated by 293 nucleotidesDvMF_0825 and DvMF_0826 are separated by 467 nucleotides DvMF_0823: DvMF_0823 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 993,314 to 994,684 _0823 DvMF_0824: DvMF_0824 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 994,692 to 996,542 _0824 DvMF_0825: DvMF_0825 - hypothetical protein (RefSeq), at 996,836 to 997,072 _0825 DvMF_0826: DvMF_0826 - cytochrome c assembly protein (RefSeq), at 997,540 to 999,438 _0826 Position (kb) 994 995 996 997Strain fitness (log2 ratio) -2 -1 0 1at 993.900 kb on - strand, within DvMF_0823at 993.983 kb on - strand, within DvMF_0823at 993.983 kb on - strand, within DvMF_0823at 994.069 kb on - strand, within DvMF_0823at 994.376 kb on + strand, within DvMF_0823at 994.392 kb on - strand, within DvMF_0823at 994.511 kb on - strand, within DvMF_0823at 994.545 kb on - strand, within DvMF_0823at 994.687 kb on - strandat 995.084 kb on + strand, within DvMF_0824at 995.305 kb on + strand, within DvMF_0824at 995.313 kb on - strand, within DvMF_0824at 995.560 kb on - strand, within DvMF_0824at 995.867 kb on + strand, within DvMF_0824at 995.912 kb on + strand, within DvMF_0824at 996.001 kb on - strand, within DvMF_0824at 996.011 kb on - strand, within DvMF_0824at 996.131 kb on - strand, within DvMF_0824at 996.150 kb on - strand, within DvMF_0824at 996.197 kb on + strand, within DvMF_0824at 996.205 kb on - strand, within DvMF_0824at 996.305 kb on - strand, within DvMF_0824at 996.366 kb on - strandat 996.366 kb on - strandat 996.427 kb on - strandat 996.429 kb on - strandat 996.749 kb on + strandat 997.090 kb on + strandat 997.204 kb on - strandat 997.224 kb on - strandat 997.229 kb on - strandat 997.312 kb on + strandat 997.335 kb on - strandat 997.379 kb on + strandat 997.527 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
remove
993,900 - DvMF_0823 0.43 -0.6
993,983 - DvMF_0823 0.49 -0.5
993,983 - DvMF_0823 0.49 -0.1
994,069 - DvMF_0823 0.55 -0.3
994,376 + DvMF_0823 0.77 -1.5
994,392 - DvMF_0823 0.79 -0.1
994,511 - DvMF_0823 0.87 -0.3
994,545 - DvMF_0823 0.90 -0.1
994,687 - -0.8
995,084 + DvMF_0824 0.21 -1.9
995,305 + DvMF_0824 0.33 -1.2
995,313 - DvMF_0824 0.34 -1.1
995,560 - DvMF_0824 0.47 -0.3
995,867 + DvMF_0824 0.63 -1.0
995,912 + DvMF_0824 0.66 -0.5
996,001 - DvMF_0824 0.71 -2.6
996,011 - DvMF_0824 0.71 -2.6
996,131 - DvMF_0824 0.78 -0.6
996,150 - DvMF_0824 0.79 -0.7
996,197 + DvMF_0824 0.81 +1.1
996,205 - DvMF_0824 0.82 -0.6
996,305 - DvMF_0824 0.87 -0.1
996,366 - +0.2
996,366 - +0.7
996,427 - -2.3
996,429 - -0.3
996,749 + -0.5
997,090 + -1.4
997,204 - -0.3
997,224 - -0.6
997,229 - +1.0
997,312 + -0.6
997,335 - -0.8
997,379 + -0.7
997,527 - -1.1

Or see this region's nucleotide sequence