Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0517 and DvMF_0518 are separated by 190 nucleotides DvMF_0518 and DvMF_0519 are separated by 76 nucleotides
DvMF_0517: DvMF_0517 - alanine dehydrogenase (RefSeq), at 610,546 to 611,655
_0517
DvMF_0518: DvMF_0518 - ABC transporter related (RefSeq), at 611,846 to 612,601
_0518
DvMF_0519: DvMF_0519 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq), at 612,678 to 613,742
_0519
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 611.311 kb on - strand, within DvMF_0517 at 611.463 kb on + strand, within DvMF_0517 at 611.489 kb on - strand, within DvMF_0517 at 611.503 kb on + strand, within DvMF_0517 at 611.504 kb on - strand, within DvMF_0517 at 611.566 kb on + strand at 611.647 kb on + strand at 611.687 kb on - strand at 611.788 kb on + strand at 611.934 kb on + strand, within DvMF_0518 at 611.944 kb on + strand, within DvMF_0518 at 612.021 kb on - strand, within DvMF_0518 at 612.069 kb on + strand, within DvMF_0518 at 612.234 kb on + strand, within DvMF_0518 at 612.449 kb on + strand, within DvMF_0518 at 612.476 kb on - strand, within DvMF_0518 at 612.831 kb on + strand, within DvMF_0519 at 612.901 kb on - strand, within DvMF_0519 at 612.915 kb on - strand, within DvMF_0519 at 613.047 kb on - strand, within DvMF_0519 at 613.061 kb on + strand, within DvMF_0519 at 613.137 kb on - strand, within DvMF_0519 at 613.234 kb on - strand, within DvMF_0519 at 613.440 kb on - strand, within DvMF_0519 at 613.529 kb on + strand, within DvMF_0519
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml remove 611,311 - DvMF_0517 0.69 -1.4 611,463 + DvMF_0517 0.83 -1.4 611,489 - DvMF_0517 0.85 +0.1 611,503 + DvMF_0517 0.86 -0.2 611,504 - DvMF_0517 0.86 +0.4 611,566 + -3.4 611,647 + +0.6 611,687 - -1.3 611,788 + -2.6 611,934 + DvMF_0518 0.12 -3.6 611,944 + DvMF_0518 0.13 -1.4 612,021 - DvMF_0518 0.23 -1.2 612,069 + DvMF_0518 0.29 -0.8 612,234 + DvMF_0518 0.51 -0.4 612,449 + DvMF_0518 0.80 -1.4 612,476 - DvMF_0518 0.83 -1.7 612,831 + DvMF_0519 0.14 -0.9 612,901 - DvMF_0519 0.21 -0.3 612,915 - DvMF_0519 0.22 -3.2 613,047 - DvMF_0519 0.35 +0.1 613,061 + DvMF_0519 0.36 +0.0 613,137 - DvMF_0519 0.43 -2.0 613,234 - DvMF_0519 0.52 -0.4 613,440 - DvMF_0519 0.72 -0.7 613,529 + DvMF_0519 0.80 +0.4
Or see this region's nucleotide sequence