Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0362

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0361 and DvMF_0362 are separated by 80 nucleotidesDvMF_0362 and DvMF_0363 are separated by 69 nucleotidesDvMF_0363 and DvMF_0364 are separated by 192 nucleotides DvMF_0361: DvMF_0361 - LL-diaminopimelate aminotransferase (RefSeq), at 425,474 to 426,643 _0361 DvMF_0362: DvMF_0362 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 426,724 to 427,200 _0362 DvMF_0363: DvMF_0363 - TRASH domain protein (RefSeq), at 427,270 to 427,566 _0363 DvMF_0364: DvMF_0364 - putative translaldolase (RefSeq), at 427,759 to 428,412 _0364 Position (kb) 426 427 428Strain fitness (log2 ratio) -1 0 1at 426.630 kb on + strandat 427.212 kb on - strandat 427.225 kb on + strandat 427.628 kb on - strandat 427.685 kb on - strandat 427.759 kb on + strandat 427.946 kb on + strand, within DvMF_0364at 428.028 kb on + strand, within DvMF_0364at 428.036 kb on - strand, within DvMF_0364

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
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426,630 + -0.9
427,212 - -0.7
427,225 + -0.3
427,628 - -0.3
427,685 - -1.5
427,759 + +0.7
427,946 + DvMF_0364 0.29 +0.1
428,028 + DvMF_0364 0.41 -0.0
428,036 - DvMF_0364 0.42 -0.4

Or see this region's nucleotide sequence