Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0336 and DvMF_0337 are separated by 833 nucleotides DvMF_0337 and DvMF_0338 are separated by 179 nucleotides DvMF_0338 and DvMF_0339 are separated by 119 nucleotides
DvMF_0336: DvMF_0336 - transcriptional regulator, TetR family (RefSeq), at 392,561 to 393,136
_0336
DvMF_0337: DvMF_0337 - phospholipid/glycerol acyltransferase (RefSeq), at 393,970 to 394,812
_0337
DvMF_0338: DvMF_0338 - glycosyl transferase, group 2 family protein (RefSeq), at 394,992 to 395,663
_0338
DvMF_0339: DvMF_0339 - recombination factor protein RarA (RefSeq), at 395,783 to 397,009
_0339
Position (kb) 393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 392.970 kb on - strand, within DvMF_0336 at 393.224 kb on - strand at 393.298 kb on + strand at 393.406 kb on + strand at 393.406 kb on + strand at 393.660 kb on + strand at 393.752 kb on + strand at 393.936 kb on - strand at 394.860 kb on + strand at 395.343 kb on - strand, within DvMF_0338 at 395.410 kb on + strand, within DvMF_0338 at 395.594 kb on + strand, within DvMF_0338 at 395.602 kb on - strand at 395.716 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml remove 392,970 - DvMF_0336 0.71 -0.2 393,224 - -0.1 393,298 + -0.7 393,406 + -0.8 393,406 + -0.8 393,660 + +0.0 393,752 + -0.9 393,936 - -0.7 394,860 + -2.8 395,343 - DvMF_0338 0.52 -0.2 395,410 + DvMF_0338 0.62 -0.5 395,594 + DvMF_0338 0.90 -1.0 395,602 - -0.4 395,716 + -0.6
Or see this region's nucleotide sequence