Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0017

Experiment: MoYLS4 with Sisomicin 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0015 and DvMF_0016 overlap by 4 nucleotidesDvMF_0016 and DvMF_0017 are separated by 71 nucleotidesDvMF_0017 and DvMF_0018 are separated by 3 nucleotidesDvMF_0018 and DvMF_0019 are separated by 37 nucleotides DvMF_0015: DvMF_0015 - peptidase C26 (RefSeq), at 21,211 to 21,834 _0015 DvMF_0016: DvMF_0016 - transferase, putative (RefSeq), at 21,831 to 22,622 _0016 DvMF_0017: DvMF_0017 - Methyltransferase type 11 (RefSeq), at 22,694 to 23,458 _0017 DvMF_0018: DvMF_0018 - adenylylsulfate kinase (RefSeq), at 23,462 to 24,049 _0018 DvMF_0019: DvMF_0019 - hypothetical protein (RefSeq), at 24,087 to 25,421 _0019 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1at 21.836 kb on - strandat 22.011 kb on - strand, within DvMF_0016at 22.263 kb on + strand, within DvMF_0016at 22.379 kb on + strand, within DvMF_0016at 22.399 kb on - strand, within DvMF_0016at 22.399 kb on - strand, within DvMF_0016at 22.399 kb on - strand, within DvMF_0016at 23.086 kb on + strand, within DvMF_0017at 23.304 kb on + strand, within DvMF_0017at 23.334 kb on + strand, within DvMF_0017at 23.460 kb on - strandat 23.723 kb on - strand, within DvMF_0018at 24.058 kb on + strandat 24.058 kb on + strandat 24.066 kb on - strandat 24.066 kb on - strandat 24.109 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.03125 mg/ml
remove
21,836 - -0.9
22,011 - DvMF_0016 0.23 -0.3
22,263 + DvMF_0016 0.55 -0.0
22,379 + DvMF_0016 0.69 -1.6
22,399 - DvMF_0016 0.72 -1.3
22,399 - DvMF_0016 0.72 -0.6
22,399 - DvMF_0016 0.72 -2.5
23,086 + DvMF_0017 0.51 +1.6
23,304 + DvMF_0017 0.80 -0.5
23,334 + DvMF_0017 0.84 -0.5
23,460 - -1.7
23,723 - DvMF_0018 0.44 -2.5
24,058 + -0.5
24,058 + -0.6
24,066 - -1.7
24,066 - -0.7
24,109 - -0.7

Or see this region's nucleotide sequence