Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4058

Experiment: Thymidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Thymidine (C)
4,875,600	-		Shewana3_4057	0.42	+2.0
4,875,622	-		Shewana3_4057	0.43	-0.7
4,875,645	-		Shewana3_4057	0.45	+1.2
4,875,691	+		Shewana3_4057	0.49	-0.6
4,875,736	-		Shewana3_4057	0.52	+1.5
4,875,746	+		Shewana3_4057	0.53	+1.4
4,875,746	+		Shewana3_4057	0.53	+1.4
4,875,746	+		Shewana3_4057	0.53	+1.6
4,875,754	-		Shewana3_4057	0.54	+1.3
4,875,754	-		Shewana3_4057	0.54	-0.5
4,875,754	-		Shewana3_4057	0.54	-0.0
4,875,837	+		Shewana3_4057	0.61	+1.2
4,875,845	-		Shewana3_4057	0.61	+0.4
4,875,845	-		Shewana3_4057	0.61	-0.3
4,875,845	-		Shewana3_4057	0.61	-0.8
4,876,157	-		Shewana3_4057	0.86	+4.4
4,876,237	+				-0.3
4,876,243	+				-0.6
4,876,311	+				-0.3
4,876,316	+				-0.0
4,876,316	+				-0.7
4,876,324	-				+1.8
4,876,324	-				+1.7
4,876,324	-				-0.7
4,876,324	-				-0.7
4,876,410	-				-0.8
4,876,424	-				-1.7
4,876,463	+				+0.1
4,876,595	+				+0.0
4,876,595	+				-0.5
4,876,604	-				+1.8
4,876,633	+				+2.1
4,876,641	-				-0.9
4,876,641	-				+0.0
4,876,675	-				+1.0
4,876,681	+				+1.3
4,876,681	+				-1.0
4,876,683	-				-0.1
4,876,685	+				+1.9
4,876,685	+				+1.4
4,876,689	-				+0.9
4,876,689	-				-2.3
4,876,693	-				+0.5
4,876,726	+				+1.0
4,876,734	-		Shewana3_4058	0.10	+1.3
4,876,735	-		Shewana3_4058	0.10	-1.1
4,876,735	-		Shewana3_4058	0.10	-0.5
4,876,738	+		Shewana3_4058	0.11	-0.2
4,876,764	-		Shewana3_4058	0.12	-0.3
4,876,764	-		Shewana3_4058	0.12	-0.1
4,876,769	-		Shewana3_4058	0.13	-1.8
4,876,769	-		Shewana3_4058	0.13	-0.3
4,876,817	+		Shewana3_4058	0.16	+1.9
4,876,817	+		Shewana3_4058	0.16	+0.8
4,876,817	+		Shewana3_4058	0.16	-0.2
4,876,817	+		Shewana3_4058	0.16	-0.5
4,876,817	+		Shewana3_4058	0.16	-1.1
4,876,825	-		Shewana3_4058	0.16	+1.3
4,876,825	-		Shewana3_4058	0.16	-0.2
4,876,841	-		Shewana3_4058	0.17	-0.4
4,876,852	-		Shewana3_4058	0.18	+1.4
4,876,855	+		Shewana3_4058	0.18	+1.4
4,876,944	-		Shewana3_4058	0.24	-3.1
4,876,945	-		Shewana3_4058	0.24	+1.2
4,876,950	+		Shewana3_4058	0.24	-0.5
4,876,960	+		Shewana3_4058	0.25	-0.0
4,876,965	+		Shewana3_4058	0.25	+0.5
4,876,968	-		Shewana3_4058	0.26	-0.4
4,877,028	+		Shewana3_4058	0.30	-0.6
4,877,028	+		Shewana3_4058	0.30	+1.6
4,877,028	+		Shewana3_4058	0.30	-0.7
4,877,028	+		Shewana3_4058	0.30	+1.1
4,877,036	-		Shewana3_4058	0.30	-0.2
4,877,036	-		Shewana3_4058	0.30	+2.3
4,877,036	-		Shewana3_4058	0.30	-0.3
4,877,036	-		Shewana3_4058	0.30	-1.0
4,877,036	-		Shewana3_4058	0.30	-0.8
4,877,046	-		Shewana3_4058	0.31	+0.1
4,877,060	+		Shewana3_4058	0.32	+1.2
4,877,068	-		Shewana3_4058	0.32	+0.3
4,877,081	+		Shewana3_4058	0.33	+2.2
4,877,081	+		Shewana3_4058	0.33	-0.1
4,877,081	+		Shewana3_4058	0.33	+0.1
4,877,081	+		Shewana3_4058	0.33	-0.7
4,877,081	+		Shewana3_4058	0.33	-0.3
4,877,081	+		Shewana3_4058	0.33	-0.7
4,877,081	+		Shewana3_4058	0.33	-0.1
4,877,081	+		Shewana3_4058	0.33	+1.1
4,877,081	+		Shewana3_4058	0.33	-0.5
4,877,081	+		Shewana3_4058	0.33	+1.0
4,877,089	-		Shewana3_4058	0.34	-1.1
4,877,089	-		Shewana3_4058	0.34	-0.5
4,877,089	-		Shewana3_4058	0.34	+0.9
4,877,089	-		Shewana3_4058	0.34	+1.4
4,877,089	-		Shewana3_4058	0.34	+2.0
4,877,089	-		Shewana3_4058	0.34	-0.1
4,877,089	-		Shewana3_4058	0.34	+0.9
4,877,089	-		Shewana3_4058	0.34	+3.9
4,877,089	-		Shewana3_4058	0.34	+2.4
4,877,126	-		Shewana3_4058	0.36	-0.6
4,877,132	+		Shewana3_4058	0.36	-0.3
4,877,147	-		Shewana3_4058	0.37	-0.9
4,877,157	-		Shewana3_4058	0.38	+0.8
4,877,159	+		Shewana3_4058	0.38	-0.3
4,877,172	-		Shewana3_4058	0.39	-0.3
4,877,194	-		Shewana3_4058	0.40	-0.7
4,877,206	-		Shewana3_4058	0.41	-0.5
4,877,222	-		Shewana3_4058	0.42	-0.6
4,877,238	-		Shewana3_4058	0.43	-0.5
4,877,262	+		Shewana3_4058	0.45	-0.7
4,877,271	+		Shewana3_4058	0.46	+0.1
4,877,301	-		Shewana3_4058	0.48	+1.6
4,877,397	+		Shewana3_4058	0.54	-0.4
4,877,429	+		Shewana3_4058	0.56	+0.0
4,877,437	-		Shewana3_4058	0.56	+1.0
4,877,438	-		Shewana3_4058	0.57	+1.3
4,877,458	+		Shewana3_4058	0.58	-0.1
4,877,463	-		Shewana3_4058	0.58	+1.3
4,877,543	+		Shewana3_4058	0.63	+0.5
4,877,550	+		Shewana3_4058	0.64	+0.0
4,877,551	-		Shewana3_4058	0.64	+1.3
4,877,551	-		Shewana3_4058	0.64	-1.5
4,877,553	-		Shewana3_4058	0.64	+0.1
4,877,558	-		Shewana3_4058	0.64	-0.7
4,877,558	-		Shewana3_4058	0.64	+1.2
4,877,575	-		Shewana3_4058	0.66	-0.6
4,877,596	+		Shewana3_4058	0.67	-0.3
4,877,661	+		Shewana3_4058	0.71	+1.6
4,877,661	+		Shewana3_4058	0.71	+1.4
4,877,669	+		Shewana3_4058	0.72	+1.6
4,877,679	-		Shewana3_4058	0.72	-2.0
4,877,690	-		Shewana3_4058	0.73	+0.4
4,877,745	+		Shewana3_4058	0.77	+1.2
4,877,755	+		Shewana3_4058	0.77	-0.8
4,877,816	+		Shewana3_4058	0.81	+1.2
4,877,816	+		Shewana3_4058	0.81	-0.3
4,877,824	-		Shewana3_4058	0.82	+1.5
4,877,824	-		Shewana3_4058	0.82	+0.1
4,877,824	-		Shewana3_4058	0.82	+2.0
4,877,824	-		Shewana3_4058	0.82	+1.0
4,877,824	-		Shewana3_4058	0.82	+0.6
4,877,825	+		Shewana3_4058	0.82	+0.9
4,877,825	-		Shewana3_4058	0.82	-0.8
4,877,830	+		Shewana3_4058	0.82	-0.5
4,877,830	+		Shewana3_4058	0.82	-0.1
4,877,830	+		Shewana3_4058	0.82	-0.4
4,877,830	+		Shewana3_4058	0.82	+1.5
4,877,830	+		Shewana3_4058	0.82	+1.5
4,877,830	+		Shewana3_4058	0.82	-0.4
4,877,830	+		Shewana3_4058	0.82	-1.7
4,877,830	+		Shewana3_4058	0.82	-0.4
4,877,838	-		Shewana3_4058	0.83	+0.4
4,877,838	-		Shewana3_4058	0.83	-0.8
4,877,838	-		Shewana3_4058	0.83	-0.1
4,877,838	-		Shewana3_4058	0.83	+1.4
4,877,838	-		Shewana3_4058	0.83	-0.0
4,877,838	-		Shewana3_4058	0.83	-0.4
4,877,838	-		Shewana3_4058	0.83	+1.5
4,877,838	-		Shewana3_4058	0.83	-0.3
4,877,838	-		Shewana3_4058	0.83	-0.1
4,877,838	-		Shewana3_4058	0.83	-0.4
4,877,838	-		Shewana3_4058	0.83	+0.8
4,877,838	-		Shewana3_4058	0.83	+0.9
4,877,840	+		Shewana3_4058	0.83	+1.7
4,877,866	-		Shewana3_4058	0.85	-0.9
4,877,868	-		Shewana3_4058	0.85	-0.3
4,877,869	-		Shewana3_4058	0.85	-0.6
4,877,883	-		Shewana3_4058	0.86	+1.9
4,877,884	-		Shewana3_4058	0.86	-0.3
4,877,900	+		Shewana3_4058	0.87	-1.0
4,877,910	+		Shewana3_4058	0.88	+0.5
4,877,910	+		Shewana3_4058	0.88	+1.2
4,877,965	+				+2.0
4,878,052	-				-0.1
4,878,142	+				-0.2
4,878,150	-				-0.3
4,878,152	+				-0.7
4,878,165	-				+0.1
4,878,198	+				+1.3
4,878,204	-				+0.1
4,878,206	-				-0.6
4,878,206	-				+1.3
4,878,271	-				+1.2
4,878,344	+				+0.1
4,878,346	-				-0.7
4,878,381	-				+1.3
4,878,391	+				+0.3
4,878,391	+				-0.3
4,878,399	-				+1.0
4,878,525	-		Shewana3_4059	0.12	-0.0
4,878,636	-		Shewana3_4059	0.19	+1.4
4,878,772	-		Shewana3_4059	0.28	-0.1
4,878,806	-		Shewana3_4059	0.30	+0.4
4,878,827	+		Shewana3_4059	0.32	+2.0
4,878,991	+		Shewana3_4059	0.42	-0.3
4,878,991	+		Shewana3_4059	0.42	+1.5
4,878,991	+		Shewana3_4059	0.42	-1.1
4,878,999	-		Shewana3_4059	0.43	-0.5
4,879,071	+		Shewana3_4059	0.48	-0.3