Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3451 and Shewana3_3452 are separated by 227 nucleotides Shewana3_3452 and Shewana3_3453 are separated by 189 nucleotides
Shewana3_3451: Shewana3_3451 - hypothetical protein (RefSeq), at 4,134,028 to 4,135,719
_3451
Shewana3_3452: Shewana3_3452 - hypothetical protein (RefSeq), at 4,135,947 to 4,136,324
_3452
Shewana3_3453: Shewana3_3453 - peptidase M50 (RefSeq), at 4,136,514 to 4,137,638
_3453
Position (kb) 4135
4136
4137 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4134.977 kb on + strand, within Shewana3_3451 at 4135.124 kb on - strand, within Shewana3_3451 at 4135.172 kb on + strand, within Shewana3_3451 at 4135.270 kb on - strand, within Shewana3_3451 at 4135.275 kb on + strand, within Shewana3_3451 at 4135.298 kb on - strand, within Shewana3_3451 at 4135.298 kb on - strand, within Shewana3_3451 at 4135.430 kb on - strand, within Shewana3_3451 at 4135.576 kb on + strand at 4135.581 kb on + strand at 4135.675 kb on - strand at 4135.701 kb on - strand at 4135.720 kb on - strand at 4135.729 kb on + strand at 4135.857 kb on + strand at 4135.875 kb on - strand at 4136.015 kb on + strand, within Shewana3_3452 at 4136.110 kb on + strand, within Shewana3_3452 at 4136.140 kb on - strand, within Shewana3_3452 at 4136.247 kb on + strand, within Shewana3_3452 at 4136.247 kb on + strand, within Shewana3_3452 at 4136.255 kb on - strand, within Shewana3_3452 at 4136.255 kb on - strand, within Shewana3_3452 at 4136.332 kb on - strand at 4136.405 kb on + strand at 4136.522 kb on + strand at 4136.668 kb on + strand, within Shewana3_3453 at 4136.848 kb on + strand, within Shewana3_3453 at 4136.908 kb on + strand, within Shewana3_3453 at 4136.916 kb on - strand, within Shewana3_3453 at 4136.916 kb on - strand, within Shewana3_3453 at 4136.916 kb on - strand, within Shewana3_3453 at 4136.918 kb on + strand, within Shewana3_3453 at 4137.039 kb on + strand, within Shewana3_3453
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 4,134,977 + Shewana3_3451 0.56 -0.6 4,135,124 - Shewana3_3451 0.65 +0.4 4,135,172 + Shewana3_3451 0.68 -1.5 4,135,270 - Shewana3_3451 0.73 -1.0 4,135,275 + Shewana3_3451 0.74 +0.7 4,135,298 - Shewana3_3451 0.75 -0.5 4,135,298 - Shewana3_3451 0.75 -0.8 4,135,430 - Shewana3_3451 0.83 -0.5 4,135,576 + +1.1 4,135,581 + -1.8 4,135,675 - +0.9 4,135,701 - +0.0 4,135,720 - -0.3 4,135,729 + -0.4 4,135,857 + -0.3 4,135,875 - -0.1 4,136,015 + Shewana3_3452 0.18 +1.2 4,136,110 + Shewana3_3452 0.43 +2.7 4,136,140 - Shewana3_3452 0.51 +1.3 4,136,247 + Shewana3_3452 0.79 +1.5 4,136,247 + Shewana3_3452 0.79 -1.0 4,136,255 - Shewana3_3452 0.81 +1.4 4,136,255 - Shewana3_3452 0.81 -0.2 4,136,332 - +0.3 4,136,405 + -2.0 4,136,522 + -0.4 4,136,668 + Shewana3_3453 0.14 +5.1 4,136,848 + Shewana3_3453 0.30 -0.1 4,136,908 + Shewana3_3453 0.35 -0.2 4,136,916 - Shewana3_3453 0.36 +0.3 4,136,916 - Shewana3_3453 0.36 +0.2 4,136,916 - Shewana3_3453 0.36 -0.3 4,136,918 + Shewana3_3453 0.36 +1.9 4,137,039 + Shewana3_3453 0.47 +1.4
Or see this region's nucleotide sequence