Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3326 and Shewana3_3327 are separated by 73 nucleotides Shewana3_3327 and Shewana3_3328 are separated by 13 nucleotides Shewana3_3328 and Shewana3_3329 are separated by 38 nucleotides
Shewana3_3326: Shewana3_3326 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,987,431 to 3,989,008
_3326
Shewana3_3327: Shewana3_3327 - GCN5-related N-acetyltransferase (RefSeq), at 3,989,082 to 3,989,501
_3327
Shewana3_3328: Shewana3_3328 - hypothetical protein (RefSeq), at 3,989,515 to 3,989,844
_3328
Shewana3_3329: Shewana3_3329 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 3,989,883 to 3,991,607
_3329
Position (kb)
3989
3990 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3988.701 kb on - strand, within Shewana3_3326 at 3988.715 kb on + strand, within Shewana3_3326 at 3988.859 kb on - strand at 3989.160 kb on + strand, within Shewana3_3327 at 3989.162 kb on + strand, within Shewana3_3327 at 3989.196 kb on + strand, within Shewana3_3327 at 3989.261 kb on - strand, within Shewana3_3327 at 3989.418 kb on - strand, within Shewana3_3327 at 3989.425 kb on + strand, within Shewana3_3327 at 3989.425 kb on + strand, within Shewana3_3327 at 3989.490 kb on - strand at 3989.580 kb on + strand, within Shewana3_3328 at 3989.791 kb on - strand, within Shewana3_3328 at 3989.852 kb on + strand at 3989.860 kb on - strand at 3990.030 kb on + strand at 3990.037 kb on + strand at 3990.038 kb on - strand at 3990.241 kb on + strand, within Shewana3_3329 at 3990.241 kb on + strand, within Shewana3_3329 at 3990.268 kb on + strand, within Shewana3_3329 at 3990.317 kb on - strand, within Shewana3_3329 at 3990.573 kb on - strand, within Shewana3_3329 at 3990.754 kb on - strand, within Shewana3_3329 at 3990.754 kb on - strand, within Shewana3_3329 at 3990.801 kb on - strand, within Shewana3_3329 at 3990.801 kb on - strand, within Shewana3_3329 at 3990.837 kb on + strand, within Shewana3_3329
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 3,988,701 - Shewana3_3326 0.80 -0.6 3,988,715 + Shewana3_3326 0.81 -0.6 3,988,859 - -0.7 3,989,160 + Shewana3_3327 0.19 +0.2 3,989,162 + Shewana3_3327 0.19 -0.3 3,989,196 + Shewana3_3327 0.27 +0.3 3,989,261 - Shewana3_3327 0.43 -0.3 3,989,418 - Shewana3_3327 0.80 -0.1 3,989,425 + Shewana3_3327 0.82 +4.8 3,989,425 + Shewana3_3327 0.82 -0.3 3,989,490 - +1.5 3,989,580 + Shewana3_3328 0.20 -0.7 3,989,791 - Shewana3_3328 0.84 -0.8 3,989,852 + +2.2 3,989,860 - +1.0 3,990,030 + +0.3 3,990,037 + -1.8 3,990,038 - -0.9 3,990,241 + Shewana3_3329 0.21 -2.3 3,990,241 + Shewana3_3329 0.21 +1.2 3,990,268 + Shewana3_3329 0.22 -0.1 3,990,317 - Shewana3_3329 0.25 -0.6 3,990,573 - Shewana3_3329 0.40 -0.5 3,990,754 - Shewana3_3329 0.50 +0.1 3,990,754 - Shewana3_3329 0.50 +1.0 3,990,801 - Shewana3_3329 0.53 -3.1 3,990,801 - Shewana3_3329 0.53 -0.5 3,990,837 + Shewana3_3329 0.55 -1.8
Or see this region's nucleotide sequence