Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3328

Experiment: Thymidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3326 and Shewana3_3327 are separated by 73 nucleotidesShewana3_3327 and Shewana3_3328 are separated by 13 nucleotidesShewana3_3328 and Shewana3_3329 are separated by 38 nucleotides Shewana3_3326: Shewana3_3326 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,987,431 to 3,989,008 _3326 Shewana3_3327: Shewana3_3327 - GCN5-related N-acetyltransferase (RefSeq), at 3,989,082 to 3,989,501 _3327 Shewana3_3328: Shewana3_3328 - hypothetical protein (RefSeq), at 3,989,515 to 3,989,844 _3328 Shewana3_3329: Shewana3_3329 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 3,989,883 to 3,991,607 _3329 Position (kb) 3989 3990Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3988.701 kb on - strand, within Shewana3_3326at 3988.715 kb on + strand, within Shewana3_3326at 3988.859 kb on - strandat 3989.160 kb on + strand, within Shewana3_3327at 3989.162 kb on + strand, within Shewana3_3327at 3989.196 kb on + strand, within Shewana3_3327at 3989.261 kb on - strand, within Shewana3_3327at 3989.418 kb on - strand, within Shewana3_3327at 3989.425 kb on + strand, within Shewana3_3327at 3989.425 kb on + strand, within Shewana3_3327at 3989.490 kb on - strandat 3989.580 kb on + strand, within Shewana3_3328at 3989.791 kb on - strand, within Shewana3_3328at 3989.852 kb on + strandat 3989.860 kb on - strandat 3990.030 kb on + strandat 3990.037 kb on + strandat 3990.038 kb on - strandat 3990.241 kb on + strand, within Shewana3_3329at 3990.241 kb on + strand, within Shewana3_3329at 3990.268 kb on + strand, within Shewana3_3329at 3990.317 kb on - strand, within Shewana3_3329at 3990.573 kb on - strand, within Shewana3_3329at 3990.754 kb on - strand, within Shewana3_3329at 3990.754 kb on - strand, within Shewana3_3329at 3990.801 kb on - strand, within Shewana3_3329at 3990.801 kb on - strand, within Shewana3_3329at 3990.837 kb on + strand, within Shewana3_3329

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
remove
3,988,701 - Shewana3_3326 0.80 -0.6
3,988,715 + Shewana3_3326 0.81 -0.6
3,988,859 - -0.7
3,989,160 + Shewana3_3327 0.19 +0.2
3,989,162 + Shewana3_3327 0.19 -0.3
3,989,196 + Shewana3_3327 0.27 +0.3
3,989,261 - Shewana3_3327 0.43 -0.3
3,989,418 - Shewana3_3327 0.80 -0.1
3,989,425 + Shewana3_3327 0.82 +4.8
3,989,425 + Shewana3_3327 0.82 -0.3
3,989,490 - +1.5
3,989,580 + Shewana3_3328 0.20 -0.7
3,989,791 - Shewana3_3328 0.84 -0.8
3,989,852 + +2.2
3,989,860 - +1.0
3,990,030 + +0.3
3,990,037 + -1.8
3,990,038 - -0.9
3,990,241 + Shewana3_3329 0.21 -2.3
3,990,241 + Shewana3_3329 0.21 +1.2
3,990,268 + Shewana3_3329 0.22 -0.1
3,990,317 - Shewana3_3329 0.25 -0.6
3,990,573 - Shewana3_3329 0.40 -0.5
3,990,754 - Shewana3_3329 0.50 +0.1
3,990,754 - Shewana3_3329 0.50 +1.0
3,990,801 - Shewana3_3329 0.53 -3.1
3,990,801 - Shewana3_3329 0.53 -0.5
3,990,837 + Shewana3_3329 0.55 -1.8

Or see this region's nucleotide sequence