Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2890 and Shewana3_2891 are separated by 134 nucleotides Shewana3_2891 and Shewana3_2892 are separated by 153 nucleotides Shewana3_2892 and Shewana3_2893 are separated by 87 nucleotides
Shewana3_2890: Shewana3_2890 - isocitrate dehydrogenase (RefSeq), at 3,460,159 to 3,461,169
_2890
Shewana3_2891: Shewana3_2891 - putative RNA 2'-O-ribose methyltransferase (RefSeq), at 3,461,304 to 3,462,389
_2891
Shewana3_2892: Shewana3_2892 - hypothetical protein (RefSeq), at 3,462,543 to 3,462,935
_2892
Shewana3_2893: Shewana3_2893 - hypothetical protein (RefSeq), at 3,463,023 to 3,463,694
_2893
Position (kb)
3461
3462
3463 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3461.276 kb on + strand at 3461.332 kb on - strand at 3461.332 kb on - strand at 3462.079 kb on + strand, within Shewana3_2891 at 3462.140 kb on - strand, within Shewana3_2891 at 3462.518 kb on + strand at 3462.611 kb on - strand, within Shewana3_2892 at 3462.665 kb on + strand, within Shewana3_2892 at 3462.665 kb on + strand, within Shewana3_2892 at 3462.681 kb on - strand, within Shewana3_2892 at 3463.005 kb on - strand at 3463.188 kb on - strand, within Shewana3_2893 at 3463.379 kb on - strand, within Shewana3_2893
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 3,461,276 + +0.5 3,461,332 - -0.7 3,461,332 - +1.8 3,462,079 + Shewana3_2891 0.71 -1.4 3,462,140 - Shewana3_2891 0.77 -1.2 3,462,518 + +2.0 3,462,611 - Shewana3_2892 0.17 +0.3 3,462,665 + Shewana3_2892 0.31 -0.9 3,462,665 + Shewana3_2892 0.31 +3.1 3,462,681 - Shewana3_2892 0.35 -0.7 3,463,005 - +1.4 3,463,188 - Shewana3_2893 0.25 -0.4 3,463,379 - Shewana3_2893 0.53 -0.2
Or see this region's nucleotide sequence