Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2891

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2890 and Shewana3_2891 are separated by 134 nucleotidesShewana3_2891 and Shewana3_2892 are separated by 153 nucleotidesShewana3_2892 and Shewana3_2893 are separated by 87 nucleotides Shewana3_2890: Shewana3_2890 - isocitrate dehydrogenase (RefSeq), at 3,460,159 to 3,461,169 _2890 Shewana3_2891: Shewana3_2891 - putative RNA 2'-O-ribose methyltransferase (RefSeq), at 3,461,304 to 3,462,389 _2891 Shewana3_2892: Shewana3_2892 - hypothetical protein (RefSeq), at 3,462,543 to 3,462,935 _2892 Shewana3_2893: Shewana3_2893 - hypothetical protein (RefSeq), at 3,463,023 to 3,463,694 _2893 Position (kb) 3461 3462 3463Strain fitness (log2 ratio) -1 0 1 2 3at 3461.276 kb on + strandat 3461.332 kb on - strandat 3461.332 kb on - strandat 3462.079 kb on + strand, within Shewana3_2891at 3462.140 kb on - strand, within Shewana3_2891at 3462.518 kb on + strandat 3462.611 kb on - strand, within Shewana3_2892at 3462.665 kb on + strand, within Shewana3_2892at 3462.665 kb on + strand, within Shewana3_2892at 3462.681 kb on - strand, within Shewana3_2892at 3463.005 kb on - strandat 3463.188 kb on - strand, within Shewana3_2893at 3463.379 kb on - strand, within Shewana3_2893

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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3,461,276 + +0.5
3,461,332 - -0.7
3,461,332 - +1.8
3,462,079 + Shewana3_2891 0.71 -1.4
3,462,140 - Shewana3_2891 0.77 -1.2
3,462,518 + +2.0
3,462,611 - Shewana3_2892 0.17 +0.3
3,462,665 + Shewana3_2892 0.31 -0.9
3,462,665 + Shewana3_2892 0.31 +3.1
3,462,681 - Shewana3_2892 0.35 -0.7
3,463,005 - +1.4
3,463,188 - Shewana3_2893 0.25 -0.4
3,463,379 - Shewana3_2893 0.53 -0.2

Or see this region's nucleotide sequence