Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2739 and Shewana3_2740 are separated by 125 nucleotides Shewana3_2740 and Shewana3_2741 are separated by 303 nucleotides Shewana3_2741 and Shewana3_2742 are separated by 315 nucleotides Shewana3_2742 and Shewana3_2743 are separated by 27 nucleotides
Shewana3_2739: Shewana3_2739 - hypothetical protein (RefSeq), at 3,271,044 to 3,271,616
_2739
Shewana3_2740: Shewana3_2740 - hypothetical protein (RefSeq), at 3,271,742 to 3,272,140
_2740
Shewana3_2741: Shewana3_2741 - hypothetical protein (RefSeq), at 3,272,444 to 3,273,046
_2741
Shewana3_2742: Shewana3_2742 - lysine exporter protein LysE/YggA (RefSeq), at 3,273,362 to 3,273,955
_2742
Shewana3_2743: Shewana3_2743 - hypothetical protein (RefSeq), at 3,273,983 to 3,274,531
_2743
Position (kb)
3272
3273
3274 Strain fitness (log2 ratio)
-1
0
1
2 at 3271.629 kb on - strand at 3271.638 kb on - strand at 3271.667 kb on + strand at 3271.667 kb on + strand at 3272.305 kb on + strand at 3272.332 kb on + strand at 3272.369 kb on - strand at 3272.411 kb on - strand at 3272.444 kb on + strand at 3272.452 kb on - strand at 3272.543 kb on + strand, within Shewana3_2741 at 3272.551 kb on - strand, within Shewana3_2741 at 3272.931 kb on - strand, within Shewana3_2741 at 3272.968 kb on + strand, within Shewana3_2741 at 3273.449 kb on - strand, within Shewana3_2742 at 3273.449 kb on - strand, within Shewana3_2742 at 3273.489 kb on + strand, within Shewana3_2742 at 3273.542 kb on - strand, within Shewana3_2742 at 3273.555 kb on - strand, within Shewana3_2742 at 3273.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 3,271,629 - -0.6 3,271,638 - -0.2 3,271,667 + -0.5 3,271,667 + -0.1 3,272,305 + -0.7 3,272,332 + +0.2 3,272,369 - -0.5 3,272,411 - -0.2 3,272,444 + -0.5 3,272,452 - -0.3 3,272,543 + Shewana3_2741 0.16 -0.5 3,272,551 - Shewana3_2741 0.18 -1.7 3,272,931 - Shewana3_2741 0.81 -0.6 3,272,968 + Shewana3_2741 0.87 -0.5 3,273,449 - Shewana3_2742 0.15 -0.7 3,273,449 - Shewana3_2742 0.15 -0.7 3,273,489 + Shewana3_2742 0.21 +2.3 3,273,542 - Shewana3_2742 0.30 +0.0 3,273,555 - Shewana3_2742 0.32 -0.7 3,273,998 - -0.4
Or see this region's nucleotide sequence