Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2537

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2536 and Shewana3_2537 are separated by 704 nucleotidesShewana3_2537 and Shewana3_2538 are separated by 116 nucleotidesShewana3_2538 and Shewana3_2539 are separated by 116 nucleotides Shewana3_2536: Shewana3_2536 - prolyl oligopeptidase (RefSeq), at 3,031,577 to 3,033,757 _2536 Shewana3_2537: Shewana3_2537 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,034,462 to 3,035,361 _2537 Shewana3_2538: Shewana3_2538 - BadM/Rrf2 family transcriptional regulator (RefSeq), at 3,035,478 to 3,035,891 _2538 Shewana3_2539: Shewana3_2539 - OmpA/MotB domain-containing protein (RefSeq), at 3,036,008 to 3,036,880 _2539 Position (kb) 3034 3035 3036Strain fitness (log2 ratio) -1 0 1 2 3at 3033.627 kb on - strandat 3033.728 kb on + strandat 3033.795 kb on + strandat 3033.807 kb on + strandat 3034.263 kb on - strandat 3034.350 kb on + strandat 3034.350 kb on + strandat 3034.382 kb on + strandat 3034.423 kb on - strandat 3034.767 kb on - strand, within Shewana3_2537at 3035.313 kb on + strandat 3035.970 kb on + strandat 3036.044 kb on + strandat 3036.103 kb on + strand, within Shewana3_2539at 3036.125 kb on - strand, within Shewana3_2539

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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3,033,627 - -1.0
3,033,728 + -0.8
3,033,795 + -0.0
3,033,807 + +0.1
3,034,263 - -0.1
3,034,350 + -0.1
3,034,350 + -0.3
3,034,382 + -0.7
3,034,423 - -0.0
3,034,767 - Shewana3_2537 0.34 -0.4
3,035,313 + +0.4
3,035,970 + +1.2
3,036,044 + +2.8
3,036,103 + Shewana3_2539 0.11 +1.1
3,036,125 - Shewana3_2539 0.13 +2.5

Or see this region's nucleotide sequence