Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2536 and Shewana3_2537 are separated by 704 nucleotides Shewana3_2537 and Shewana3_2538 are separated by 116 nucleotides Shewana3_2538 and Shewana3_2539 are separated by 116 nucleotides
Shewana3_2536: Shewana3_2536 - prolyl oligopeptidase (RefSeq), at 3,031,577 to 3,033,757
_2536
Shewana3_2537: Shewana3_2537 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,034,462 to 3,035,361
_2537
Shewana3_2538: Shewana3_2538 - BadM/Rrf2 family transcriptional regulator (RefSeq), at 3,035,478 to 3,035,891
_2538
Shewana3_2539: Shewana3_2539 - OmpA/MotB domain-containing protein (RefSeq), at 3,036,008 to 3,036,880
_2539
Position (kb)
3034
3035
3036 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3033.627 kb on - strand at 3033.728 kb on + strand at 3033.795 kb on + strand at 3033.807 kb on + strand at 3034.263 kb on - strand at 3034.350 kb on + strand at 3034.350 kb on + strand at 3034.382 kb on + strand at 3034.423 kb on - strand at 3034.767 kb on - strand, within Shewana3_2537 at 3035.313 kb on + strand at 3035.970 kb on + strand at 3036.044 kb on + strand at 3036.103 kb on + strand, within Shewana3_2539 at 3036.125 kb on - strand, within Shewana3_2539
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 3,033,627 - -1.0 3,033,728 + -0.8 3,033,795 + -0.0 3,033,807 + +0.1 3,034,263 - -0.1 3,034,350 + -0.1 3,034,350 + -0.3 3,034,382 + -0.7 3,034,423 - -0.0 3,034,767 - Shewana3_2537 0.34 -0.4 3,035,313 + +0.4 3,035,970 + +1.2 3,036,044 + +2.8 3,036,103 + Shewana3_2539 0.11 +1.1 3,036,125 - Shewana3_2539 0.13 +2.5
Or see this region's nucleotide sequence